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  5. Brara.D01227.1

Brara.D01227.1


Description : Unknown function


Gene families : OG_42_0000249 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000249_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.D01227.1
Cluster HCAA Clusters: Cluster_152

Target Alias Description ECC score Gene Family Method Actions
At4g05460 No alias F-box protein SKIP19 [Source:UniProtKB/Swiss-Prot;Acc:Q9M0U9] 0.04 Orthogroups_2024-Update
Bradi3g17440 No alias RNI-like superfamily protein 0.03 Orthogroups_2024-Update
GRMZM2G102720 No alias RNI-like superfamily protein 0.05 Orthogroups_2024-Update
HORVU5Hr1G020150.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Seita.3G316900.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Sobic.007G070500.1 No alias Unknown function 0.07 Orthogroups_2024-Update
Solyc08g013780 No alias F-box family protein (AHRD V3.3 *-* D7M2J7_ARALL) 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA 16Dec
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Type GO Term Name Evidence Source
CC GO:0005667 transcription factor complex IEP Predicted GO
CC GO:0005669 transcription factor TFIID complex IEP Predicted GO
BP GO:0006352 DNA-templated transcription, initiation IEP Predicted GO
BP GO:0006367 transcription initiation from RNA polymerase II promoter IEP Predicted GO
BP GO:0032774 RNA biosynthetic process IEP Predicted GO
CC GO:0044428 nuclear part IEP Predicted GO
CC GO:0044451 nucleoplasm part IEP Predicted GO
CC GO:0044798 nuclear transcription factor complex IEP Predicted GO
CC GO:0090575 RNA polymerase II transcription factor complex IEP Predicted GO
InterPro domains Description Start Stop
IPR001611 Leu-rich_rpt 107 126
IPR001611 Leu-rich_rpt 213 228
IPR001810 F-box_dom 9 53
No external refs found!