Brara.D01371.1

Description : histone H3K9 methyltransferase *(SUVH5/6) & EC_2.1 transferase transferring one-carbon group

Gene families : OG_42_0000288 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000288_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Brassica rapa: Brara.D01371.1
Cluster	HCAA Clusters: Cluster_267

Target	Alias	Description	ECC score	Gene Family Method
104841	No alias	SU(VAR)3-9 homolog 4	0.03	Orthogroups_2024-Update
Brara.E01067.1	No alias	methyl-DNA-binding factor of DNA methylation pathway...	0.03	Orthogroups_2024-Update
Brara.F01249.1	No alias	EC_2.1 transferase transferring one-carbon group	0.03	Orthogroups_2024-Update
Brara.G03290.1	No alias	methylated DNA binding component *(SUVH1/3) of SUVH-DNAJ...	0.03	Orthogroups_2024-Update
GRMZM2G300955	No alias	SU(VAR)3-9 homolog 5	0.04	Orthogroups_2024-Update
GRMZM2G358121	No alias	SU(VAR)3-9 homolog 6	0.03	Orthogroups_2024-Update
Glyma.01G204900	No alias	SU(VAR)3-9 homolog 6	0.05	Orthogroups_2024-Update
HORVU3Hr1G098590.1	No alias	EC_2.1 transferase transferring one-carbon group	0.02	Orthogroups_2024-Update
HORVU5Hr1G045170.1	No alias	methylated DNA binding component *(SUVH1/3) of SUVH-DNAJ...	0.03	Orthogroups_2024-Update
LOC_Os08g30910	No alias	YDG/SRA domain containing protein, expressed	0.02	Orthogroups_2024-Update
MA_279935g0010	No alias	(at4g13460 : 337.0) Encodes a SU(VAR)3-9 homolog, a SET...	0.03	Orthogroups_2024-Update
Seita.3G196800.1	No alias	methylated DNA binding component *(SUVH1/3) of SUVH-DNAJ...	0.03	Orthogroups_2024-Update
Seita.6G137800.1	No alias	histone H3K9 methyltransferase *(SUVH5/6) & EC_2.1...	0.05	Orthogroups_2024-Update
Seita.8G004300.1	No alias	methylated DNA binding component *(SUVH1/3) of SUVH-DNAJ...	0.05	Orthogroups_2024-Update
Solyc10g077070	No alias	Histone-lysine N-methyltransferase, H3 lysine-9 specific...	0.02	Orthogroups_2024-Update
Sopen06g021100	No alias	SAD/SRA domain	0.02	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IEA	16Dec
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	16Dec
BP	GO:0006325	chromatin organization	None	Extended
BP	GO:0006464	cellular protein modification process	None	Extended
BP	GO:0006479	protein methylation	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0008168	methyltransferase activity	None	Extended
MF	GO:0008170	N-methyltransferase activity	None	Extended
BP	GO:0008213	protein alkylation	None	Extended
MF	GO:0008270	zinc ion binding	IEA	16Dec
MF	GO:0008276	protein methyltransferase activity	None	Extended
MF	GO:0008757	S-adenosylmethionine-dependent methyltransferase activity	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
MF	GO:0016278	lysine N-methyltransferase activity	None	Extended
MF	GO:0016279	protein-lysine N-methyltransferase activity	None	Extended
BP	GO:0016569	covalent chromatin modification	None	Extended
BP	GO:0016570	histone modification	None	Extended
BP	GO:0016571	histone methylation	None	Extended
MF	GO:0016740	transferase activity	None	Extended
MF	GO:0016741	transferase activity, transferring one-carbon groups	None	Extended
BP	GO:0018022	peptidyl-lysine methylation	None	Extended
MF	GO:0018024	histone-lysine N-methyltransferase activity	IEA	16Dec
BP	GO:0018193	peptidyl-amino acid modification	None	Extended
BP	GO:0018205	peptidyl-lysine modification	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0032259	methylation	None	Extended
BP	GO:0034968	histone lysine methylation	IEA	16Dec
BP	GO:0036211	protein modification process	None	Extended
MF	GO:0042054	histone methyltransferase activity	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0043414	macromolecule methylation	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044464	cell part	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
MF	GO:0140096	catalytic activity, acting on a protein	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000154	rRNA modification	IEP	Predicted GO
BP	GO:0001510	RNA methylation	IEP	Predicted GO
CC	GO:0005743	mitochondrial inner membrane	IEP	Predicted GO
BP	GO:0006839	mitochondrial transport	IEP	Predicted GO
BP	GO:0006848	pyruvate transport	IEP	Predicted GO
BP	GO:0006850	mitochondrial pyruvate transmembrane transport	IEP	Predicted GO
MF	GO:0008173	RNA methyltransferase activity	IEP	Predicted GO
MF	GO:0008649	rRNA methyltransferase activity	IEP	Predicted GO
BP	GO:0015711	organic anion transport	IEP	Predicted GO
BP	GO:0015718	monocarboxylic acid transport	IEP	Predicted GO
BP	GO:0015849	organic acid transport	IEP	Predicted GO
MF	GO:0016436	rRNA (uridine) methyltransferase activity	IEP	Predicted GO
CC	GO:0019866	organelle inner membrane	IEP	Predicted GO
CC	GO:0030880	RNA polymerase complex	IEP	Predicted GO
BP	GO:0031167	rRNA methylation	IEP	Predicted GO
CC	GO:0031966	mitochondrial membrane	IEP	Predicted GO
BP	GO:0046942	carboxylic acid transport	IEP	Predicted GO
BP	GO:0048364	root development	IEP	Predicted GO
BP	GO:0048367	shoot system development	IEP	Predicted GO
BP	GO:0048731	system development	IEP	Predicted GO
CC	GO:0061695	transferase complex, transferring phosphorus-containing groups	IEP	Predicted GO
MF	GO:0070042	rRNA (uridine-N3-)-methyltransferase activity	IEP	Predicted GO
BP	GO:0070475	rRNA base methylation	IEP	Predicted GO
BP	GO:0098656	anion transmembrane transport	IEP	Predicted GO
BP	GO:0099402	plant organ development	IEP	Predicted GO
MF	GO:0140102	catalytic activity, acting on a rRNA	IEP	Predicted GO
BP	GO:1901475	pyruvate transmembrane transport	IEP	Predicted GO
BP	GO:1903825	organic acid transmembrane transport	IEP	Predicted GO
BP	GO:1905039	carboxylic acid transmembrane transport	IEP	Predicted GO
BP	GO:1990542	mitochondrial transmembrane transport	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR001214	SET_dom	614	746
IPR007728	Pre-SET_dom	499	595
IPR003105	SRA_YDG	315	474

External Links

No external refs found!

Brara.D01371.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation