Brara.D01500.1

Description : ligand-gated cation channel *(GLR)

Gene families : OG_42_0000065 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000065_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Brassica rapa: Brara.D01500.1
Cluster	HCAA Clusters: Cluster_64

Target	Alias	Description	ECC score	Gene Family Method
Glyma.13G308400	No alias	glutamate receptor 3.4	0.03	Orthogroups_2024-Update
HORVU2Hr1G064530.8	No alias	ligand-gated cation channel *(GLR)	0.03	Orthogroups_2024-Update
HORVU5Hr1G010420.23	No alias	ligand-gated cation channel *(GLR)	0.02	Orthogroups_2024-Update
LOC_Os06g08910	No alias	glutamate receptor 2.8 precursor, putative, expressed	0.02	Orthogroups_2024-Update
MA_9224859g0010	No alias	(at4g35290 : 187.0) Encodes a putative glutamate...	0.03	Orthogroups_2024-Update
PSME_00000830-RA	No alias	(at2g29100 : 521.0) member of Putative ligand-gated ion...	0.03	Orthogroups_2024-Update
Potri.001G374600	No alias	glutamate receptor 2.7	0.03	Orthogroups_2024-Update
Potri.006G268700	No alias	glutamate receptor 2.8	0.04	Orthogroups_2024-Update
Seita.4G260800.1	No alias	ligand-gated cation channel *(GLR)	0.03	Orthogroups_2024-Update
Sobic.002G208800.2	No alias	ligand-gated cation channel *(GLR)	0.03	Orthogroups_2024-Update
Sopen02g022210	No alias	Receptor family ligand binding region	0.02	Orthogroups_2024-Update
Sopen05g026960	No alias	Receptor family ligand binding region	0.03	Orthogroups_2024-Update
Sopen06g022650	No alias	Receptor family ligand binding region	0.02	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005215	transporter activity	None	Extended
MF	GO:0005216	ion channel activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
MF	GO:0015075	ion transmembrane transporter activity	None	Extended
MF	GO:0015267	channel activity	None	Extended
MF	GO:0015276	ligand-gated ion channel activity	IEA	16Dec
MF	GO:0015318	inorganic molecular entity transmembrane transporter activity	None	Extended
CC	GO:0016020	membrane	IEA	16Dec
MF	GO:0022803	passive transmembrane transporter activity	None	Extended
MF	GO:0022834	ligand-gated channel activity	None	Extended
MF	GO:0022836	gated channel activity	None	Extended
MF	GO:0022838	substrate-specific channel activity	None	Extended
MF	GO:0022839	ion gated channel activity	None	Extended
MF	GO:0022857	transmembrane transporter activity	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0004143	diacylglycerol kinase activity	IEP	Predicted GO
CC	GO:0005694	chromosome	IEP	Predicted GO
BP	GO:0006308	DNA catabolic process	IEP	Predicted GO
BP	GO:0007186	G protein-coupled receptor signaling pathway	IEP	Predicted GO
BP	GO:0007205	protein kinase C-activating G protein-coupled receptor signaling pathway	IEP	Predicted GO
MF	GO:0030145	manganese ion binding	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR001828	ANF_lig-bd_rcpt	65	369
IPR001320	Iontro_rcpt	778	814
IPR001638	Solute-binding_3/MltF_N	453	777

External Links

No external refs found!