Description : MADS/AGL-type transcription factor
Gene families : OG_42_0000009 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | Brassica rapa: Brara.D01509.1 | |
Cluster | HCAA Clusters: Cluster_403 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
At2g34440 | No alias | AGL29 [Source:UniProtKB/TrEMBL;Acc:A0A178VU29] | 0.03 | Orthogroups_2024-Update | |
At2g42830 | No alias | K-box region and MADS-box transcription factor family... | 0.03 | Orthogroups_2024-Update | |
At4g09960 | No alias | K-box region and MADS-box transcription factor family... | 0.03 | Orthogroups_2024-Update | |
At5g23260 | No alias | K-box region and MADS-box transcription factor family... | 0.03 | Orthogroups_2024-Update | |
Brara.A03890.1 | No alias | regulatory protein *(SEPALLATA) of floral meristem... | 0.03 | Orthogroups_2024-Update | |
Brara.C00694.1 | No alias | regulatory protein *(SEPALLATA) of floral meristem... | 0.04 | Orthogroups_2024-Update | |
Brara.E02241.1 | No alias | MADS/AGL-type transcription factor | 0.04 | Orthogroups_2024-Update | |
Brara.J00749.1 | No alias | MADS/AGL-type transcription factor | 0.05 | Orthogroups_2024-Update | |
Glyma.04G043800 | No alias | AGAMOUS-like 66 | 0.02 | Orthogroups_2024-Update | |
Glyma.09G266400 | No alias | AGAMOUS-like 6 | 0.03 | Orthogroups_2024-Update | |
Glyma.13G034100 | No alias | K-box region and MADS-box transcription factor family protein | 0.03 | Orthogroups_2024-Update | |
LOC_Os01g10504 | No alias | OsMADS3 - MADS-box family gene with MIKCc type-box, expressed | 0.02 | Orthogroups_2024-Update | |
MA_101463g0010 | No alias | (q9xj60|mad50_orysa : 102.0) MADS-box transcription... | 0.03 | Orthogroups_2024-Update | |
Solyc01g093960 | No alias | MADS-box transcription factor (AHRD V3.3 *** A0A072TNM9_MEDTR) | 0.02 | Orthogroups_2024-Update |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003677 | DNA binding | IEA | 16Dec |
MF | GO:0046983 | protein dimerization activity | IEA | 16Dec |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0004518 | nuclease activity | IEP | Predicted GO |
MF | GO:0004519 | endonuclease activity | IEP | Predicted GO |
MF | GO:0004521 | endoribonuclease activity | IEP | Predicted GO |
MF | GO:0004523 | RNA-DNA hybrid ribonuclease activity | IEP | Predicted GO |
MF | GO:0004540 | ribonuclease activity | IEP | Predicted GO |
MF | GO:0004655 | porphobilinogen synthase activity | IEP | Predicted GO |
MF | GO:0005544 | calcium-dependent phospholipid binding | IEP | Predicted GO |
CC | GO:0005669 | transcription factor TFIID complex | IEP | Predicted GO |
BP | GO:0006694 | steroid biosynthetic process | IEP | Predicted GO |
BP | GO:0008202 | steroid metabolic process | IEP | Predicted GO |
BP | GO:0016125 | sterol metabolic process | IEP | Predicted GO |
BP | GO:0016126 | sterol biosynthetic process | IEP | Predicted GO |
MF | GO:0016628 | oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor | IEP | Predicted GO |
MF | GO:0016891 | endoribonuclease activity, producing 5'-phosphomonoesters | IEP | Predicted GO |
MF | GO:0016893 | endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters | IEP | Predicted GO |
BP | GO:0019915 | lipid storage | IEP | Predicted GO |
BP | GO:1901617 | organic hydroxy compound biosynthetic process | IEP | Predicted GO |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR002100 | TF_MADSbox | 18 | 65 |
No external refs found! |