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  5. Brara.D01745.1

Brara.D01745.1


Description : ligand-gated cation channel *(GLR)


Gene families : OG_42_0000065 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000065_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.D01745.1
Cluster HCAA Clusters: Cluster_237

Target Alias Description ECC score Gene Family Method Actions
GRMZM2G139933 No alias glutamate receptor 2.7 0.02 Orthogroups_2024-Update
Glyma.07G226400 No alias glutamate receptor 2.8 0.03 Orthogroups_2024-Update
Glyma.13G308400 No alias glutamate receptor 3.4 0.03 Orthogroups_2024-Update
HORVU1Hr1G086120.3 No alias ligand-gated cation channel *(GLR) 0.03 Orthogroups_2024-Update
PSME_00043809-RA No alias (q7xp59|glr31_orysa : 583.0) Glutamate receptor 3.1... 0.02 Orthogroups_2024-Update
Pp1s56_31V6 No alias glutamate-gated kainate-type ion channel receptor subunit 5 0.03 Orthogroups_2024-Update
Sobic.004G013200.2 No alias ligand-gated cation channel *(GLR) 0.04 Orthogroups_2024-Update
evm.model.contig_448.19 No alias no hits & (original description: no original description) 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0015276 ligand-gated ion channel activity IEA 16Dec
CC GO:0016020 membrane IEA 16Dec
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Type GO Term Name Evidence Source
MF GO:0003852 2-isopropylmalate synthase activity IEP Predicted GO
MF GO:0004180 carboxypeptidase activity IEP Predicted GO
MF GO:0004185 serine-type carboxypeptidase activity IEP Predicted GO
BP GO:0006551 leucine metabolic process IEP Predicted GO
MF GO:0008238 exopeptidase activity IEP Predicted GO
BP GO:0009081 branched-chain amino acid metabolic process IEP Predicted GO
BP GO:0009082 branched-chain amino acid biosynthetic process IEP Predicted GO
BP GO:0009098 leucine biosynthetic process IEP Predicted GO
BP GO:0009314 response to radiation IEP Predicted GO
BP GO:0009416 response to light stimulus IEP Predicted GO
BP GO:0009581 detection of external stimulus IEP Predicted GO
BP GO:0009582 detection of abiotic stimulus IEP Predicted GO
BP GO:0009583 detection of light stimulus IEP Predicted GO
BP GO:0009584 detection of visible light IEP Predicted GO
BP GO:0009605 response to external stimulus IEP Predicted GO
BP GO:0009628 response to abiotic stimulus IEP Predicted GO
MF GO:0046912 transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer IEP Predicted GO
BP GO:0051606 detection of stimulus IEP Predicted GO
MF GO:0070008 serine-type exopeptidase activity IEP Predicted GO
BP GO:1901607 alpha-amino acid biosynthetic process IEP Predicted GO
InterPro domains Description Start Stop
IPR001828 ANF_lig-bd_rcpt 62 392
IPR001638 Solute-binding_3/MltF_N 474 800
IPR001320 Iontro_rcpt 801 836
No external refs found!