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  5. Brara.D02006.1

Brara.D02006.1


Description : EC_3.2 glycosylase


Gene families : OG_42_0000512 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000512_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.D02006.1
Cluster HCAA Clusters: Cluster_399

Target Alias Description ECC score Gene Family Method Actions
At1g43080 No alias Glycoside hydrolase family 28 protein... 0.03 Orthogroups_2024-Update
At3g07830 No alias Pectin lyase-like superfamily protein... 0.04 Orthogroups_2024-Update
At3g07840 No alias Pectin lyase-like superfamily protein... 0.03 Orthogroups_2024-Update
At4g18180 No alias Pectin lyase-like superfamily protein [Source:TAIR;Acc:AT4G18180] 0.03 Orthogroups_2024-Update
At5g48140 No alias At5g48140 [Source:UniProtKB/TrEMBL;Acc:Q9LUB8] 0.05 Orthogroups_2024-Update
Brara.C02225.1 No alias pectin lyase & EC_3.2 glycosylase 0.04 Orthogroups_2024-Update
Brara.F03031.1 No alias EC_3.2 glycosylase 0.04 Orthogroups_2024-Update
Brara.G00223.1 No alias pectin lyase & EC_3.2 glycosylase 0.04 Orthogroups_2024-Update
Potri.001G377700 No alias Pectin lyase-like superfamily protein 0.03 Orthogroups_2024-Update
Potri.009G169100 No alias Pectin lyase-like superfamily protein 0.03 Orthogroups_2024-Update
Seita.4G218200.1 No alias EC_3.2 glycosylase 0.04 Orthogroups_2024-Update
Seita.4G218300.1 No alias EC_3.2 glycosylase 0.04 Orthogroups_2024-Update
Seita.5G182200.1 No alias EC_3.2 glycosylase 0.04 Orthogroups_2024-Update
Seita.9G141800.1 No alias EC_3.2 glycosylase 0.04 Orthogroups_2024-Update
Solyc07g056290 No alias Pectin lyase-like superfamily protein (AHRD V3.3 *** AT1G78400.1) 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0004650 polygalacturonase activity IEA 16Dec
BP GO:0005975 carbohydrate metabolic process IEA 16Dec
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Type GO Term Name Evidence Source
MF GO:0004356 glutamate-ammonia ligase activity IEP Predicted GO
BP GO:0006541 glutamine metabolic process IEP Predicted GO
BP GO:0006542 glutamine biosynthetic process IEP Predicted GO
MF GO:0009055 electron transfer activity IEP Predicted GO
MF GO:0016211 ammonia ligase activity IEP Predicted GO
MF GO:0016880 acid-ammonia (or amide) ligase activity IEP Predicted GO
BP GO:0019915 lipid storage IEP Predicted GO
InterPro domains Description Start Stop
IPR000743 Glyco_hydro_28 72 397
No external refs found!