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  5. Brara.D02192.1

Brara.D02192.1


Description : RAV/NGATHA-type transcription factor


Gene families : OG_42_0000305 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000305_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.D02192.1
Cluster HCAA Clusters: Cluster_285

Target Alias Description ECC score Gene Family Method Actions
A4A49_27413 No alias ap2erf and b3 domain-containing transcription factor rav1 0.03 Orthogroups_2024-Update
GRMZM2G159592 No alias related to ABI3/VP1 1 0.02 Orthogroups_2024-Update
LOC_Os01g04800 No alias B3 DNA binding domain containing protein, expressed 0.02 Orthogroups_2024-Update
LOC_Os10g39190 No alias B3 DNA binding domain containing protein, expressed 0.02 Orthogroups_2024-Update
Seita.9G350800.1 No alias AP2-RAV-type transcription factor *(EDF) 0.03 Orthogroups_2024-Update
Sopen04g002090 No alias B3 DNA binding domain 0.02 Orthogroups_2024-Update
Sopen05g005620 No alias B3 DNA binding domain 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA 16Dec
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Type GO Term Name Evidence Source
CC GO:0005618 cell wall IEP Predicted GO
CC GO:0005783 endoplasmic reticulum IEP Predicted GO
BP GO:0006457 protein folding IEP Predicted GO
BP GO:0009605 response to external stimulus IEP Predicted GO
BP GO:0009606 tropism IEP Predicted GO
BP GO:0010274 hydrotropism IEP Predicted GO
MF GO:0015035 protein disulfide oxidoreductase activity IEP Predicted GO
MF GO:0015036 disulfide oxidoreductase activity IEP Predicted GO
MF GO:0016667 oxidoreductase activity, acting on a sulfur group of donors IEP Predicted GO
MF GO:0016670 oxidoreductase activity, acting on a sulfur group of donors, oxygen as acceptor IEP Predicted GO
MF GO:0016762 xyloglucan:xyloglucosyl transferase activity IEP Predicted GO
MF GO:0016972 thiol oxidase activity IEP Predicted GO
CC GO:0030312 external encapsulating structure IEP Predicted GO
BP GO:0034975 protein folding in endoplasmic reticulum IEP Predicted GO
MF GO:0048037 cofactor binding IEP Predicted GO
CC GO:0048046 apoplast IEP Predicted GO
MF GO:0050662 coenzyme binding IEP Predicted GO
MF GO:0051539 4 iron, 4 sulfur cluster binding IEP Predicted GO
MF GO:0071949 FAD binding IEP Predicted GO
InterPro domains Description Start Stop
IPR003340 B3_DNA-bd 57 162
No external refs found!