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  5. Brara.D02195.1

Brara.D02195.1


Description : lignin polymerization scaffold protein *(CASP)


Gene families : OG_42_0000213 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000213_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.D02195.1
Cluster HCAA Clusters: Cluster_1

Target Alias Description ECC score Gene Family Method Actions
A4A49_22807 No alias casparian strip membrane protein 2 0.02 Orthogroups_2024-Update
At2g36100 No alias Casparian strip membrane protein 1... 0.03 Orthogroups_2024-Update
Bradi2g12830 No alias Uncharacterised protein family (UPF0497) 0.05 Orthogroups_2024-Update
Glyma.07G196300 No alias Uncharacterised protein family (UPF0497) 0.04 Orthogroups_2024-Update
Glyma.07G251200 No alias Uncharacterised protein family (UPF0497) 0.02 Orthogroups_2024-Update
Glyma.15G191800 No alias Uncharacterised protein family (UPF0497) 0.03 Orthogroups_2024-Update
Potri.011G154900 No alias Uncharacterised protein family (UPF0497) 0.03 Orthogroups_2024-Update
Solyc01g067330 No alias CASP-like protein (AHRD V3.3 *** K4AWY2_SOLLC) 0.03 Orthogroups_2024-Update
Sopen06g028910 No alias Domain of unknown function (DUF588) 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003743 translation initiation factor activity IEP Predicted GO
MF GO:0004176 ATP-dependent peptidase activity IEP Predicted GO
MF GO:0005516 calmodulin binding IEP Predicted GO
BP GO:0006413 translational initiation IEP Predicted GO
BP GO:0006633 fatty acid biosynthetic process IEP Predicted GO
InterPro domains Description Start Stop
IPR006702 CASP_dom 39 187
No external refs found!