Brara.D02257.1


Description : RING-H2-class CTL-subclass E3 ubiquitin ligase


Gene families : OG_42_0000181 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000181_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.D02257.1
Cluster HCAA Clusters: Cluster_164

Target Alias Description ECC score Gene Family Method Actions
Bradi2g46070 No alias RING/U-box superfamily protein 0.02 Orthogroups_2024-Update
GRMZM2G020814 No alias RING/U-box superfamily protein 0.02 Orthogroups_2024-Update
GRMZM2G053909 No alias RING/U-box superfamily protein 0.02 Orthogroups_2024-Update
GRMZM2G061663 No alias RING/U-box superfamily protein 0.02 Orthogroups_2024-Update
GRMZM2G140924 No alias RING/U-box superfamily protein 0.04 Orthogroups_2024-Update
GRMZM2G165044 No alias RING/U-box superfamily protein 0.02 Orthogroups_2024-Update
Potri.006G274700 No alias RING/U-box superfamily protein 0.03 Orthogroups_2024-Update
Seita.4G247100.1 No alias regulatory E3 ubiquitin ligase (MREL/JUL) of microtubule... 0.04 Orthogroups_2024-Update
Sobic.006G205100.1 No alias RING-H2-class CTL-subclass E3 ubiquitin ligase 0.04 Orthogroups_2024-Update
Sopen10g021330 No alias Ring finger domain 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Predicted GO
MF GO:0004222 metalloendopeptidase activity IEP Predicted GO
MF GO:0004602 glutathione peroxidase activity IEP Predicted GO
MF GO:0004866 endopeptidase inhibitor activity IEP Predicted GO
MF GO:0004867 serine-type endopeptidase inhibitor activity IEP Predicted GO
CC GO:0005856 cytoskeleton IEP Predicted GO
CC GO:0005885 Arp2/3 protein complex IEP Predicted GO
BP GO:0006950 response to stress IEP Predicted GO
BP GO:0007015 actin filament organization IEP Predicted GO
BP GO:0008064 regulation of actin polymerization or depolymerization IEP Predicted GO
BP GO:0008154 actin polymerization or depolymerization IEP Predicted GO
BP GO:0009611 response to wounding IEP Predicted GO
BP GO:0010638 positive regulation of organelle organization IEP Predicted GO
CC GO:0015629 actin cytoskeleton IEP Predicted GO
BP GO:0030041 actin filament polymerization IEP Predicted GO
MF GO:0030414 peptidase inhibitor activity IEP Predicted GO
BP GO:0030832 regulation of actin filament length IEP Predicted GO
BP GO:0030833 regulation of actin filament polymerization IEP Predicted GO
BP GO:0030838 positive regulation of actin filament polymerization IEP Predicted GO
CC GO:0031012 extracellular matrix IEP Predicted GO
BP GO:0031334 positive regulation of protein complex assembly IEP Predicted GO
BP GO:0032271 regulation of protein polymerization IEP Predicted GO
BP GO:0032273 positive regulation of protein polymerization IEP Predicted GO
BP GO:0032535 regulation of cellular component size IEP Predicted GO
BP GO:0032956 regulation of actin cytoskeleton organization IEP Predicted GO
BP GO:0032970 regulation of actin filament-based process IEP Predicted GO
BP GO:0033043 regulation of organelle organization IEP Predicted GO
MF GO:0034062 5'-3' RNA polymerase activity IEP Predicted GO
BP GO:0034314 Arp2/3 complex-mediated actin nucleation IEP Predicted GO
BP GO:0043254 regulation of protein complex assembly IEP Predicted GO
BP GO:0044087 regulation of cellular component biogenesis IEP Predicted GO
BP GO:0044089 positive regulation of cellular component biogenesis IEP Predicted GO
CC GO:0044421 extracellular region part IEP Predicted GO
CC GO:0044430 cytoskeletal part IEP Predicted GO
BP GO:0045010 actin nucleation IEP Predicted GO
BP GO:0048518 positive regulation of biological process IEP Predicted GO
BP GO:0048522 positive regulation of cellular process IEP Predicted GO
BP GO:0051128 regulation of cellular component organization IEP Predicted GO
BP GO:0051130 positive regulation of cellular component organization IEP Predicted GO
BP GO:0051258 protein polymerization IEP Predicted GO
BP GO:0051493 regulation of cytoskeleton organization IEP Predicted GO
BP GO:0051495 positive regulation of cytoskeleton organization IEP Predicted GO
MF GO:0061134 peptidase regulator activity IEP Predicted GO
MF GO:0061135 endopeptidase regulator activity IEP Predicted GO
BP GO:0090066 regulation of anatomical structure size IEP Predicted GO
BP GO:0097435 supramolecular fiber organization IEP Predicted GO
MF GO:0097747 RNA polymerase activity IEP Predicted GO
BP GO:0110053 regulation of actin filament organization IEP Predicted GO
BP GO:1902903 regulation of supramolecular fiber organization IEP Predicted GO
BP GO:1902905 positive regulation of supramolecular fiber organization IEP Predicted GO
InterPro domains Description Start Stop
IPR001841 Znf_RING 491 534
No external refs found!