1. Home
  2. Species
  3. Brassica rapa
  4. Sequence
  5. Brara.D02299.1

Brara.D02299.1


Description : subfamily ABCB transporter


Gene families : OG_42_0000040 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000040_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.D02299.1
Cluster HCAA Clusters: Cluster_65

Target Alias Description ECC score Gene Family Method Actions
A4A49_00814 No alias abc transporter b family member 4 0.03 Orthogroups_2024-Update
A4A49_25017 No alias abc transporter b family member 9 0.03 Orthogroups_2024-Update
At1g28010 No alias ABC transporter B family member 14... 0.04 Orthogroups_2024-Update
At4g25960 No alias ABC transporter B family member 2... 0.03 Orthogroups_2024-Update
Bradi2g48610 No alias ABC transporter family protein 0.03 Orthogroups_2024-Update
Brara.F03123.1 No alias auxin efflux transporter *(ABCB19) & subfamily ABCB transporter 0.03 Orthogroups_2024-Update
Brara.F03156.1 No alias subfamily ABCB transporter 0.05 Orthogroups_2024-Update
Glyma.06G139500 No alias ATP binding cassette subfamily B19 0.03 Orthogroups_2024-Update
HORVU7Hr1G063020.3 No alias subfamily ABCB transporter 0.04 Orthogroups_2024-Update
MA_62683g0010 No alias (at2g36910 : 1072.0) Belongs to the family of... 0.03 Orthogroups_2024-Update
Potri.001G139700 No alias P-glycoprotein 2 0.05 Orthogroups_2024-Update
Potri.002G019600 No alias P-glycoprotein 13 0.03 Orthogroups_2024-Update
Potri.006G123900 No alias ATP binding cassette subfamily B1 0.03 Orthogroups_2024-Update
Potri.017G081100 No alias ATP binding cassette subfamily B19 0.04 Orthogroups_2024-Update
Potri.017G085000 No alias ABC transporter family protein 0.06 Orthogroups_2024-Update
Pp1s29_108V6 No alias multidrug pheromone mdr abc transporter family 0.02 Orthogroups_2024-Update
Pp1s338_12V6 No alias multidrug pheromone mdr abc transporter family 0.02 Orthogroups_2024-Update
Seita.3G160100.1 No alias subfamily ABCB transporter 0.03 Orthogroups_2024-Update
Solyc06g072960 No alias No description available 0.03 Orthogroups_2024-Update
Sopen02g032160 No alias ABC transporter transmembrane region 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA 16Dec
CC GO:0016020 membrane IEA 16Dec
BP GO:0055085 transmembrane transport IEA 16Dec
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003887 DNA-directed DNA polymerase activity IEP Predicted GO
MF GO:0004618 phosphoglycerate kinase activity IEP Predicted GO
MF GO:0008113 peptide-methionine (S)-S-oxide reductase activity IEP Predicted GO
MF GO:0008198 ferrous iron binding IEP Predicted GO
MF GO:0008289 lipid binding IEP Predicted GO
MF GO:0015018 galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity IEP Predicted GO
MF GO:0015020 glucuronosyltransferase activity IEP Predicted GO
MF GO:0016671 oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor IEP Predicted GO
MF GO:0016740 transferase activity IEP Predicted GO
MF GO:0016774 phosphotransferase activity, carboxyl group as acceptor IEP Predicted GO
MF GO:0034061 DNA polymerase activity IEP Predicted GO
InterPro domains Description Start Stop
IPR011527 ABC1_TM_dom 4 236
IPR011527 ABC1_TM_dom 623 872
IPR003439 ABC_transporter-like 305 454
No external refs found!