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  5. Brara.D02393.1

Brara.D02393.1


Description : component *(uL23) of large ribosomal-subunit (LSU) proteome


Gene families : OG_42_0001552 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001552_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.D02393.1
Cluster HCAA Clusters: Cluster_91

Target Alias Description ECC score Gene Family Method Actions
271663 No alias ribosomal protein L23AB 0.05 Orthogroups_2024-Update
A4A49_58225 No alias 60s ribosomal protein l23a 0.05 Orthogroups_2024-Update
A4A49_63547 No alias 60s ribosomal protein l23a 0.11 Orthogroups_2024-Update
A4A49_64626 No alias 60s ribosomal protein l23a 0.08 Orthogroups_2024-Update
At3g55280 No alias 60S ribosomal protein L23a-2... 0.04 Orthogroups_2024-Update
Bradi1g06220 No alias ribosomal protein L23AB 0.03 Orthogroups_2024-Update
Bradi5g14750 No alias ribosomal protein L23AB 0.03 Orthogroups_2024-Update
Brara.E00623.1 No alias component *(uL23) of large ribosomal-subunit (LSU) proteome 0.04 Orthogroups_2024-Update
Cre06.g282500 No alias ribosomal protein L23AA 0.09 Orthogroups_2024-Update
GRMZM2G083253 No alias ribosomal protein L23AB 0.06 Orthogroups_2024-Update
Glyma.11G143400 No alias ribosomal protein L23AB 0.05 Orthogroups_2024-Update
Glyma.12G066700 No alias ribosomal protein L23AB 0.12 Orthogroups_2024-Update
Glyma.13G332700 No alias ribosomal protein L23AB 0.04 Orthogroups_2024-Update
Glyma.15G041500 No alias ribosomal protein L23AB 0.06 Orthogroups_2024-Update
Kfl00360_0040 kfl00360_0040_v1.1 (q07761|rl23a_tobac : 206.0) 60S ribosomal protein L23a... 0.02 Orthogroups_2024-Update
MA_10430928g0010 No alias (q9at35|rl23a_dauca : 175.0) 60S ribosomal protein L23a... 0.02 Orthogroups_2024-Update
Potri.008G050200 No alias ribosomal protein L23AB 0.08 Orthogroups_2024-Update
Pp1s146_96V6 No alias 60S ribosomal protein L23A [Fritillaria agrestis] 0.03 Orthogroups_2024-Update
Pp1s46_72V6 No alias 60S ribosomal protein L23A [Fritillaria agrestis] 0.09 Orthogroups_2024-Update
Pp1s47_274V6 No alias 60S ribosomal protein L23A [Fritillaria agrestis] 0.11 Orthogroups_2024-Update
Seita.1G230300.1 No alias component *(uL23) of large ribosomal-subunit (LSU) proteome 0.07 Orthogroups_2024-Update
Seita.7G156000.1 No alias component *(uL23) of large ribosomal-subunit (LSU) proteome 0.12 Orthogroups_2024-Update
Sobic.006G137100.1 No alias component *(uL23) of large ribosomal-subunit (LSU) proteome 0.12 Orthogroups_2024-Update
Sobic.010G060500.1 No alias component *(uL23) of large ribosomal-subunit (LSU) proteome 0.09 Orthogroups_2024-Update
Solyc02g092080 No alias 60S ribosomal protein L23a (AHRD V3.3 *** RL23A_DAUCA) 0.02 Orthogroups_2024-Update
Solyc09g005720 No alias 60S ribosomal protein L23A (AHRD V3.3 *** A0A0B2RCV3_GLYSO) 0.05 Orthogroups_2024-Update
Solyc10g084610 No alias 60S ribosomal protein L23a (AHRD V3.3 *** RL23A_DAUCA) 0.08 Orthogroups_2024-Update
Solyc10g086330 No alias 60S ribosomal protein L23a (AHRD V3.3 *** RL23A_DAUCA) 0.1 Orthogroups_2024-Update
Sopen09g001610 No alias Ribosomal protein L23, N-terminal domain 0.09 Orthogroups_2024-Update
Sopen10g035710 No alias Ribosomal protein L23, N-terminal domain 0.05 Orthogroups_2024-Update
evm.model.contig_3754.2 No alias (q07761|rl23a_tobac : 174.0) 60S ribosomal protein L23a... 0.11 Orthogroups_2024-Update
evm.model.tig00000037.39 No alias (q07761|rl23a_tobac : 188.0) 60S ribosomal protein L23a... 0.05 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA 16Dec
CC GO:0005840 ribosome IEA 16Dec
BP GO:0006412 translation IEA 16Dec
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Type GO Term Name Evidence Source
MF GO:0001882 nucleoside binding IEP Predicted GO
MF GO:0001883 purine nucleoside binding IEP Predicted GO
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0003924 GTPase activity IEP Predicted GO
MF GO:0005525 GTP binding IEP Predicted GO
CC GO:0015934 large ribosomal subunit IEP Predicted GO
MF GO:0019001 guanyl nucleotide binding IEP Predicted GO
CC GO:0030684 preribosome IEP Predicted GO
CC GO:0030688 preribosome, small subunit precursor IEP Predicted GO
MF GO:0032549 ribonucleoside binding IEP Predicted GO
MF GO:0032550 purine ribonucleoside binding IEP Predicted GO
MF GO:0032561 guanyl ribonucleotide binding IEP Predicted GO
CC GO:0044391 ribosomal subunit IEP Predicted GO
InterPro domains Description Start Stop
IPR005633 Ribosomal_L23/L25_N 14 63
IPR013025 Ribosomal_L25/23 74 136
No external refs found!