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  5. Brara.D02577.1

Brara.D02577.1


Description : AS2/LOB-type transcription factor


Gene families : OG_42_0000426 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000426_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.D02577.1
Cluster HCAA Clusters: Cluster_402

Target Alias Description ECC score Gene Family Method Actions
59642 No alias LOB domain-containing protein 20 0.02 Orthogroups_2024-Update
At2g42440 No alias LOB domain-containing protein 17... 0.03 Orthogroups_2024-Update
At3g58190 No alias LBD29 [Source:UniProtKB/TrEMBL;Acc:A0A178VM67] 0.03 Orthogroups_2024-Update
Brara.D02739.1 No alias AS2/LOB-type transcription factor 0.03 Orthogroups_2024-Update
Brara.E00504.1 No alias AS2/LOB-type transcription factor 0.05 Orthogroups_2024-Update
PSME_00010378-RA No alias no hits & (original description: no original description) 0.02 Orthogroups_2024-Update
Potri.002G041200 No alias lateral organ boundaries-domain 16 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0003006 developmental process involved in reproduction IEP Predicted GO
MF GO:0005199 structural constituent of cell wall IEP Predicted GO
MF GO:0005319 lipid transporter activity IEP Predicted GO
CC GO:0005759 mitochondrial matrix IEP Predicted GO
BP GO:0006869 lipid transport IEP Predicted GO
BP GO:0009664 plant-type cell wall organization IEP Predicted GO
BP GO:0009790 embryo development IEP Predicted GO
BP GO:0009793 embryo development ending in seed dormancy IEP Predicted GO
MF GO:0016788 hydrolase activity, acting on ester bonds IEP Predicted GO
MF GO:0016837 carbon-oxygen lyase activity, acting on polysaccharides IEP Predicted GO
BP GO:0022414 reproductive process IEP Predicted GO
MF GO:0030570 pectate lyase activity IEP Predicted GO
CC GO:0031974 membrane-enclosed lumen IEP Predicted GO
CC GO:0043233 organelle lumen IEP Predicted GO
BP GO:0061024 membrane organization IEP Predicted GO
CC GO:0070013 intracellular organelle lumen IEP Predicted GO
BP GO:0071669 plant-type cell wall organization or biogenesis IEP Predicted GO
BP GO:0120009 intermembrane lipid transfer IEP Predicted GO
MF GO:0120013 intermembrane lipid transfer activity IEP Predicted GO
InterPro domains Description Start Stop
IPR004883 LOB 15 112
No external refs found!