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  5. Brara.D02603.1

Brara.D02603.1


Description : regulatory protein *(PIF) of red/far-red light perception & bHLH-type transcription factor


Gene families : OG_42_0000449 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000449_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.D02603.1
Cluster HCAA Clusters: Cluster_250

Target Alias Description ECC score Gene Family Method Actions
118904 No alias phytochrome interacting factor 3 0.04 Orthogroups_2024-Update
A4A49_38454 No alias transcription factor pif5 0.04 Orthogroups_2024-Update
At2g20180 No alias Transcription factor PIF1... 0.04 Orthogroups_2024-Update
At2g43010 No alias phytochrome interacting factor 4 [Source:TAIR;Acc:AT2G43010] 0.04 Orthogroups_2024-Update
At3g59060 No alias Transcription factor PIF5... 0.08 Orthogroups_2024-Update
Bradi1g06670 No alias phytochrome interacting factor 3-like 6 0.02 Orthogroups_2024-Update
Bradi1g13980 No alias phytochrome interacting factor 3-like 5 0.04 Orthogroups_2024-Update
Brara.C02178.1 No alias regulatory protein *(PIF) of red/far-red light... 0.04 Orthogroups_2024-Update
Brara.I05268.1 No alias regulatory protein *(PIF) of red/far-red light... 0.04 Orthogroups_2024-Update
Glyma.01G187600 No alias basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.03 Orthogroups_2024-Update
HORVU2Hr1G060680.1 No alias regulatory protein *(PIF) of red/far-red light... 0.05 Orthogroups_2024-Update
HORVU5Hr1G011780.5 No alias regulatory protein *(PIF) of red/far-red light... 0.04 Orthogroups_2024-Update
LOC_Os03g56950 No alias phytochrome-interacting factor 4, putative, expressed 0.02 Orthogroups_2024-Update
Potri.005G001800 No alias phytochrome interacting factor 3 0.03 Orthogroups_2024-Update
Pp1s147_126V6 No alias helix-loop-helix dna-binding domain containing expressed 0.03 Orthogroups_2024-Update
Seita.2G029600.1 No alias regulatory protein *(PIF) of red/far-red light... 0.04 Orthogroups_2024-Update
Solyc06g008030 No alias bHLH transcription factor 041 0.03 Orthogroups_2024-Update
Solyc07g043580 No alias bHLH transcription factor 052 0.03 Orthogroups_2024-Update
Solyc09g063010 No alias bHLH transcription factor 058 0.03 Orthogroups_2024-Update
Sopen07g023150 No alias Helix-loop-helix DNA-binding domain 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0046983 protein dimerization activity IEA 16Dec
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Type GO Term Name Evidence Source
MF GO:0004602 glutathione peroxidase activity IEP Predicted GO
MF GO:0005509 calcium ion binding IEP Predicted GO
MF GO:0015095 magnesium ion transmembrane transporter activity IEP Predicted GO
BP GO:0015693 magnesium ion transport IEP Predicted GO
MF GO:0016491 oxidoreductase activity IEP Predicted GO
MF GO:0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor IEP Predicted GO
MF GO:0016780 phosphotransferase activity, for other substituted phosphate groups IEP Predicted GO
MF GO:0016903 oxidoreductase activity, acting on the aldehyde or oxo group of donors IEP Predicted GO
MF GO:0020037 heme binding IEP Predicted GO
MF GO:0043169 cation binding IEP Predicted GO
MF GO:0046872 metal ion binding IEP Predicted GO
MF GO:0046906 tetrapyrrole binding IEP Predicted GO
MF GO:0048037 cofactor binding IEP Predicted GO
MF GO:0051287 NAD binding IEP Predicted GO
BP GO:0070838 divalent metal ion transport IEP Predicted GO
BP GO:0072511 divalent inorganic cation transport IEP Predicted GO
InterPro domains Description Start Stop
IPR011598 bHLH_dom 250 296
No external refs found!