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Description : RING-H2-class ATL-subclass E3 ubiquitin ligase
Gene families : OG_42_0000003 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Brassica rapa: Brara.D02790.1 | |
| Cluster | HCAA Clusters: Cluster_191 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| 172324 | No alias | RING/U-box superfamily protein | 0.02 | Orthogroups_2024-Update | |
| A4A49_35950 | No alias | e3 ubiquitin-protein ligase atl41 | 0.03 | Orthogroups_2024-Update | |
| A4A49_40065 | No alias | ring-h2 finger protein atl70 | 0.02 | Orthogroups_2024-Update | |
| At1g53820 | No alias | RING-H2 finger protein ATL60... | 0.03 | Orthogroups_2024-Update | |
| At3g10910 | No alias | RING-H2 finger protein ATL72... | 0.03 | Orthogroups_2024-Update | |
| At3g16720 | No alias | RING-H2 finger protein ATL2... | 0.04 | Orthogroups_2024-Update | |
| Bradi1g29611 | No alias | RING-H2 finger A3A | 0.02 | Orthogroups_2024-Update | |
| GRMZM2G021796 | No alias | RING/U-box superfamily protein | 0.03 | Orthogroups_2024-Update | |
| GRMZM2G028234 | No alias | RING/U-box superfamily protein | 0.04 | Orthogroups_2024-Update | |
| Glyma.04G215600 | No alias | RING/U-box superfamily protein | 0.03 | Orthogroups_2024-Update | |
| Glyma.05G175400 | No alias | RING/U-box superfamily protein | 0.03 | Orthogroups_2024-Update | |
| Glyma.09G140800 | No alias | carbon/nitrogen insensitive 1 | 0.03 | Orthogroups_2024-Update | |
| Glyma.10G156500 | No alias | RING/U-box superfamily protein | 0.03 | Orthogroups_2024-Update | |
| HORVU0Hr1G016510.1 | No alias | RING-H2-class ATL-subclass E3 ubiquitin ligase | 0.02 | Orthogroups_2024-Update | |
| LOC_Os01g64620 | No alias | zinc finger, C3HC4 type domain containing protein, expressed | 0.03 | Orthogroups_2024-Update | |
| LOC_Os02g43120 | No alias | zinc finger, C3HC4 type domain containing protein, expressed | 0.02 | Orthogroups_2024-Update | |
| LOC_Os06g11450 | No alias | zinc finger, C3HC4 type domain containing protein, expressed | 0.02 | Orthogroups_2024-Update | |
| MA_191025g0010 | No alias | no hits & (original description: no original description) | 0.03 | Orthogroups_2024-Update | |
| Potri.005G244800 | No alias | RING/U-box superfamily protein | 0.02 | Orthogroups_2024-Update | |
| Potri.008G018900 | No alias | RING/U-box superfamily protein | 0.03 | Orthogroups_2024-Update | |
| Potri.009G073900 | No alias | TOXICOS EN LEVADURA 2 | 0.03 | Orthogroups_2024-Update | |
| Potri.011G063100 | No alias | RING/U-box superfamily protein | 0.03 | Orthogroups_2024-Update | |
| Pp1s41_270V6 | No alias | zinc finger (c3hc4-type ring finger) family protein | 0.02 | Orthogroups_2024-Update | |
| Seita.4G173000.1 | No alias | RING-H2-class ATL-subclass E3 ubiquitin ligase | 0.02 | Orthogroups_2024-Update | |
| Sobic.003G147301.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
| Sobic.004G279000.1 | No alias | RING-H2-class ATL-subclass E3 ubiquitin ligase | 0.02 | Orthogroups_2024-Update | |
| Sopen01g035300 | No alias | Ring finger domain | 0.03 | Orthogroups_2024-Update | |
| evm.model.tig00001128.32 | No alias | no hits & (original description: no original description) | 0.01 | Orthogroups_2024-Update |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0000062 | fatty-acyl-CoA binding | IEP | Predicted GO |
| MF | GO:0003746 | translation elongation factor activity | IEP | Predicted GO |
| MF | GO:0005516 | calmodulin binding | IEP | Predicted GO |
| BP | GO:0006298 | mismatch repair | IEP | Predicted GO |
| BP | GO:0006414 | translational elongation | IEP | Predicted GO |
| MF | GO:0016667 | oxidoreductase activity, acting on a sulfur group of donors | IEP | Predicted GO |
| MF | GO:0016671 | oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor | IEP | Predicted GO |
| MF | GO:0030983 | mismatched DNA binding | IEP | Predicted GO |
| MF | GO:0033218 | amide binding | IEP | Predicted GO |
| MF | GO:0033743 | peptide-methionine (R)-S-oxide reductase activity | IEP | Predicted GO |
| MF | GO:1901567 | fatty acid derivative binding | IEP | Predicted GO |
| MF | GO:1901681 | sulfur compound binding | IEP | Predicted GO |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR001841 | Znf_RING | 133 | 176 |
| No external refs found! |