1. Home
  2. Species
  3. Brassica rapa
  4. Sequence
  5. Brara.E00011.1

Brara.E00011.1


Description : regulatory protein of RNA homeostasis


Gene families : OG_42_0000464 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000464_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.E00011.1
Cluster HCAA Clusters: Cluster_368

Target Alias Description ECC score Gene Family Method Actions
At3g06410 No alias Zinc finger CCCH domain-containing protein 34... 0.04 Orthogroups_2024-Update
Brara.J00317.1 No alias regulatory protein of RNA homeostasis 0.04 Orthogroups_2024-Update
GRMZM2G107491 No alias zinc finger protein 1 0.03 Orthogroups_2024-Update
MA_1139g0010 No alias (q9swf9|zfnl_pea : 219.0) Zinc finger CCCH... 0.02 Orthogroups_2024-Update
MA_71756g0010 No alias (at2g47850 : 148.0) Zinc finger C-x8-C-x5-C-x3-H type... 0.04 Orthogroups_2024-Update
Pp1s6_315V6 No alias nucleic acid binding 0.03 Orthogroups_2024-Update
Solyc06g008740 No alias Zinc finger transcription factor 40 0.05 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0046872 metal ion binding IEA 16Dec
Toggle parental
Type GO Term Name Evidence Source
BP GO:0006813 potassium ion transport IEP Predicted GO
MF GO:0015079 potassium ion transmembrane transporter activity IEP Predicted GO
BP GO:0071805 potassium ion transmembrane transport IEP Predicted GO
InterPro domains Description Start Stop
IPR000571 Znf_CCCH 288 313
IPR000571 Znf_CCCH 334 358
IPR000571 Znf_CCCH 55 78
IPR000571 Znf_CCCH 146 170
IPR000571 Znf_CCCH 101 123
No external refs found!