Brara.E00126.1

Description : ARF-type transcription factor

Gene families : OG_42_0000050 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000050_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Brassica rapa: Brara.E00126.1
Cluster	HCAA Clusters: Cluster_204

Target	Alias	Description	ECC score	Gene Family Method
A4A49_18150	No alias	auxin response factor 8	0.04	Orthogroups_2024-Update
A4A49_18499	No alias	auxin response factor 19	0.03	Orthogroups_2024-Update
At1g34170	No alias	Auxin response factor [Source:UniProtKB/TrEMBL;Acc:F4HT52]	0.03	Orthogroups_2024-Update
At1g34410	No alias	Putative auxin response factor 21...	0.04	Orthogroups_2024-Update
At1g43950	No alias	Putative auxin response factor 23...	0.04	Orthogroups_2024-Update
At1g59750	No alias	Auxin response factor 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8L7G0]	0.04	Orthogroups_2024-Update
At3g61830	No alias	Auxin response factor 18 [Source:UniProtKB/Swiss-Prot;Acc:Q9C5W9]	0.04	Orthogroups_2024-Update
Brara.B03784.1	No alias	ARF-type transcription factor	0.03	Orthogroups_2024-Update
Brara.E01021.1	No alias	ARF-type transcription factor	0.03	Orthogroups_2024-Update
Brara.F01415.1	No alias	ARF-type transcription factor	0.04	Orthogroups_2024-Update
Brara.I00676.1	No alias	ARF-type transcription factor	0.04	Orthogroups_2024-Update
GRMZM2G056120	No alias	Transcriptional factor B3 family protein /...	0.04	Orthogroups_2024-Update
GRMZM5G874163	No alias	Transcriptional factor B3 family protein /...	0.03	Orthogroups_2024-Update
Glyma.07G202200	No alias	Transcriptional factor B3 family protein /...	0.03	Orthogroups_2024-Update
Glyma.13G140600	No alias	auxin response factor 16	0.03	Orthogroups_2024-Update
HORVU2Hr1G125740.1	No alias	Unknown function	0.03	Orthogroups_2024-Update
LOC_Os08g40900	No alias	auxin response factor, putative, expressed	0.02	Orthogroups_2024-Update
LOC_Os11g32110	No alias	auxin response factor, putative, expressed	0.03	Orthogroups_2024-Update
Mp1g07070.1	No alias	transcription factor (ARF)	0.02	Orthogroups_2024-Update
Potri.006G138500	No alias	Transcriptional factor B3 family protein /...	0.03	Orthogroups_2024-Update
Potri.010G223200	No alias	auxin response factor 16	0.03	Orthogroups_2024-Update
Seita.1G090900.1	No alias	ARF-type transcription factor & auxin signal mediator...	0.03	Orthogroups_2024-Update
Seita.5G438100.1	No alias	ARF-type transcription factor	0.03	Orthogroups_2024-Update
Sobic.003G251700.1	No alias	ARF-type transcription factor	0.02	Orthogroups_2024-Update
Solyc09g007810	No alias	Auxin Response Factor 16A	0.02	Orthogroups_2024-Update
Sopen03g005820	No alias	Auxin response factor	0.03	Orthogroups_2024-Update
Sopen05g027770	No alias	Auxin response factor	0.02	Orthogroups_2024-Update
Sopen07g021880	No alias	Auxin response factor	0.02	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	16Dec
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	16Dec
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	16Dec
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009719	response to endogenous stimulus	None	Extended
BP	GO:0009725	response to hormone	IEA	16Dec
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010033	response to organic substance	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0042221	response to chemical	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0004089	carbonate dehydratase activity	IEP	Predicted GO
MF	GO:0004144	diacylglycerol O-acyltransferase activity	IEP	Predicted GO
MF	GO:0004497	monooxygenase activity	IEP	Predicted GO
MF	GO:0004650	polygalacturonase activity	IEP	Predicted GO
BP	GO:0006811	ion transport	IEP	Predicted GO
BP	GO:0006820	anion transport	IEP	Predicted GO
BP	GO:0006835	dicarboxylic acid transport	IEP	Predicted GO
BP	GO:0008610	lipid biosynthetic process	IEP	Predicted GO
BP	GO:0015711	organic anion transport	IEP	Predicted GO
BP	GO:0015740	C4-dicarboxylate transport	IEP	Predicted GO
BP	GO:0015743	malate transport	IEP	Predicted GO
BP	GO:0015849	organic acid transport	IEP	Predicted GO
MF	GO:0016411	acylglycerol O-acyltransferase activity	IEP	Predicted GO
MF	GO:0016705	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	IEP	Predicted GO
MF	GO:0016747	transferase activity, transferring acyl groups other than amino-acyl groups	IEP	Predicted GO
BP	GO:0044255	cellular lipid metabolic process	IEP	Predicted GO
BP	GO:0046942	carboxylic acid transport	IEP	Predicted GO
MF	GO:0050660	flavin adenine dinucleotide binding	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR010525	Auxin_resp	242	321
IPR033389	AUX/IAA_dom	458	558
IPR003340	B3_DNA-bd	115	216

External Links

No external refs found!

Brara.E00126.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation