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  5. Brara.E00198.1

Brara.E00198.1


Description : non-specific cation channel *(PQL1)


Gene families : OG_42_0001884 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001884_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.E00198.1
Cluster HCAA Clusters: Cluster_9

Target Alias Description ECC score Gene Family Method Actions
Glyma.16G142300 No alias PQ-loop repeat family protein / transmembrane family protein 0.06 Orthogroups_2024-Update
Sobic.003G124700.2 No alias non-specific cation channel *(PQL1) 0.09 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0005509 calcium ion binding IEP Predicted GO
CC GO:0005575 cellular_component IEP Predicted GO
BP GO:0008152 metabolic process IEP Predicted GO
CC GO:0009507 chloroplast IEP Predicted GO
CC GO:0009521 photosystem IEP Predicted GO
CC GO:0009522 photosystem I IEP Predicted GO
CC GO:0009523 photosystem II IEP Predicted GO
CC GO:0009536 plastid IEP Predicted GO
CC GO:0009538 photosystem I reaction center IEP Predicted GO
CC GO:0009654 photosystem II oxygen evolving complex IEP Predicted GO
BP GO:0009987 cellular process IEP Predicted GO
BP GO:0010109 regulation of photosynthesis IEP Predicted GO
BP GO:0010207 photosystem II assembly IEP Predicted GO
MF GO:0010242 oxygen evolving activity IEP Predicted GO
BP GO:0015979 photosynthesis IEP Predicted GO
MF GO:0016854 racemase and epimerase activity IEP Predicted GO
MF GO:0016857 racemase and epimerase activity, acting on carbohydrates and derivatives IEP Predicted GO
CC GO:0019898 extrinsic component of membrane IEP Predicted GO
BP GO:0022607 cellular component assembly IEP Predicted GO
MF GO:0030145 manganese ion binding IEP Predicted GO
CC GO:0032991 protein-containing complex IEP Predicted GO
BP GO:0034622 cellular protein-containing complex assembly IEP Predicted GO
BP GO:0042548 regulation of photosynthesis, light reaction IEP Predicted GO
BP GO:0042549 photosystem II stabilization IEP Predicted GO
BP GO:0043467 regulation of generation of precursor metabolites and energy IEP Predicted GO
BP GO:0043933 protein-containing complex subunit organization IEP Predicted GO
BP GO:0044237 cellular metabolic process IEP Predicted GO
CC GO:0044424 intracellular part IEP Predicted GO
CC GO:0044425 membrane part IEP Predicted GO
CC GO:0044436 thylakoid part IEP Predicted GO
CC GO:0044464 cell part IEP Predicted GO
BP GO:0065003 protein-containing complex assembly IEP Predicted GO
CC GO:0098796 membrane protein complex IEP Predicted GO
CC GO:1902494 catalytic complex IEP Predicted GO
CC GO:1990204 oxidoreductase complex IEP Predicted GO
InterPro domains Description Start Stop
IPR006603 PQ-loop_rpt 277 335
IPR006603 PQ-loop_rpt 13 68
No external refs found!