1. Home
  2. Species
  3. Brassica rapa
  4. Sequence
  5. Brara.E00235.1

Brara.E00235.1


Description : trans-splicing factor *(EMB2654)


Gene families : OG_42_0007642 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0007642_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.E00235.1
Cluster HCAA Clusters: Cluster_77


Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000381 regulation of alternative mRNA splicing, via spliceosome IEP Predicted GO
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0003873 6-phosphofructo-2-kinase activity IEP Predicted GO
BP GO:0006000 fructose metabolic process IEP Predicted GO
MF GO:0008443 phosphofructokinase activity IEP Predicted GO
MF GO:0008641 ubiquitin-like modifier activating enzyme activity IEP Predicted GO
MF GO:0016877 ligase activity, forming carbon-sulfur bonds IEP Predicted GO
MF GO:0019200 carbohydrate kinase activity IEP Predicted GO
MF GO:0019781 NEDD8 activating enzyme activity IEP Predicted GO
BP GO:0043484 regulation of RNA splicing IEP Predicted GO
BP GO:0045116 protein neddylation IEP Predicted GO
BP GO:0048024 regulation of mRNA splicing, via spliceosome IEP Predicted GO
BP GO:0050684 regulation of mRNA processing IEP Predicted GO
BP GO:1903311 regulation of mRNA metabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR033443 PPR_long 508 664
IPR002885 Pentatricopeptide_repeat 212 257
IPR002885 Pentatricopeptide_repeat 144 186
IPR002885 Pentatricopeptide_repeat 376 438
IPR002885 Pentatricopeptide_repeat 447 505
IPR002885 Pentatricopeptide_repeat 728 783
IPR002885 Pentatricopeptide_repeat 309 365
No external refs found!