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  5. Brara.E00249.1

Brara.E00249.1


Description : component *(uS5) of small ribosomal-subunit (SSU) proteome


Gene families : OG_42_0002117 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002117_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.E00249.1
Cluster HCAA Clusters: Cluster_10

Target Alias Description ECC score Gene Family Method Actions
67484 No alias Ribosomal protein S5 family protein 0.19 Orthogroups_2024-Update
A4A49_17312 No alias 40s ribosomal protein s2-4 0.13 Orthogroups_2024-Update
AC210013.4_FG019 No alias Ribosomal protein S5 family protein 0.16 Orthogroups_2024-Update
At1g58380 No alias At1g59359 [Source:UniProtKB/TrEMBL;Acc:G1JSI6] 0.14 Orthogroups_2024-Update
At3g57490 No alias 40S ribosomal protein S2-4... 0.09 Orthogroups_2024-Update
Bradi1g04660 No alias Ribosomal protein S5 family protein 0.14 Orthogroups_2024-Update
Bradi1g54270 No alias Ribosomal protein S5 family protein 0.14 Orthogroups_2024-Update
Cre01.g039250 No alias Ribosomal protein S5 family protein 0.07 Orthogroups_2024-Update
GRMZM2G092663 No alias Ribosomal protein S5 family protein 0.04 Orthogroups_2024-Update
Glyma.02G085300 No alias Ribosomal protein S5 family protein 0.19 Orthogroups_2024-Update
Glyma.05G239000 No alias Ribosomal protein S5 family protein 0.09 Orthogroups_2024-Update
Glyma.11G019500 No alias Ribosomal protein S5 family protein 0.02 Orthogroups_2024-Update
HORVU3Hr1G086050.2 No alias component *(uS5) of small ribosomal-subunit (SSU) proteome 0.18 Orthogroups_2024-Update
HORVU5Hr1G109910.2 No alias component *(uS5) of small ribosomal-subunit (SSU) proteome 0.14 Orthogroups_2024-Update
Kfl00142_0100 kfl00142_0100_v1.1 (at3g57490 : 392.0) Ribosomal protein S5 family protein;... 0.05 Orthogroups_2024-Update
LOC_Os03g59310 No alias ribosomal protein, putative, expressed 0.06 Orthogroups_2024-Update
LOC_Os07g10660 No alias ribosomal protein, putative, expressed 0.04 Orthogroups_2024-Update
Mp5g04380.1 No alias component RPS2 of SSU proteome 0.05 Orthogroups_2024-Update
Mp5g05010.1 No alias component RPS2 of SSU proteome 0.12 Orthogroups_2024-Update
Mp5g15970.1 No alias component RPS2 of SSU proteome 0.17 Orthogroups_2024-Update
PSME_00012533-RA No alias (at3g57490 : 398.0) Ribosomal protein S5 family protein;... 0.04 Orthogroups_2024-Update
PSME_00031543-RA No alias (at3g57490 : 396.0) Ribosomal protein S5 family protein;... 0.02 Orthogroups_2024-Update
Potri.001G256800 No alias Ribosomal protein S5 family protein 0.04 Orthogroups_2024-Update
Potri.006G052400 No alias Ribosomal protein S5 family protein 0.08 Orthogroups_2024-Update
Potri.016G055000 No alias Ribosomal protein S5 family protein 0.05 Orthogroups_2024-Update
Pp1s10_190V6 No alias 40s ribosomal protein 0.16 Orthogroups_2024-Update
Pp1s274_5V6 No alias 40s ribosomal protein 0.13 Orthogroups_2024-Update
Pp1s400_15V6 No alias 40s ribosomal protein 0.26 Orthogroups_2024-Update
Seita.2G079700.1 No alias component *(uS5) of small ribosomal-subunit (SSU) proteome 0.26 Orthogroups_2024-Update
Seita.9G044700.1 No alias component *(uS5) of small ribosomal-subunit (SSU) proteome 0.19 Orthogroups_2024-Update
Sobic.001G046100.1 No alias component *(uS5) of small ribosomal-subunit (SSU) proteome 0.33 Orthogroups_2024-Update
Sobic.001G046300.1 No alias component *(uS5) of small ribosomal-subunit (SSU) proteome 0.37 Orthogroups_2024-Update
Solyc04g063290 No alias 40S ribosomal protein S2 (AHRD V3.3 *** K7WJZ4_SOLTU) 0.27 Orthogroups_2024-Update
Solyc04g074300 No alias 40S ribosomal protein S2 (AHRD V3.3 *** K7WJZ4_SOLTU) 0.29 Orthogroups_2024-Update
Sopen04g026210 No alias Ribosomal protein S5, N-terminal domain 0.24 Orthogroups_2024-Update
Sopen04g029430 No alias Ribosomal protein S5, N-terminal domain 0.26 Orthogroups_2024-Update
evm.model.contig_4442.1 No alias (at1g58684 : 326.0) Ribosomal protein S5 family protein;... 0.42 Orthogroups_2024-Update
evm.model.tig00020961.135 No alias (at3g57490 : 348.0) Ribosomal protein S5 family protein;... 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA 16Dec
MF GO:0003735 structural constituent of ribosome IEA 16Dec
CC GO:0005840 ribosome IEA 16Dec
BP GO:0006412 translation IEA 16Dec
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Type GO Term Name Evidence Source
MF GO:0001882 nucleoside binding IEP Predicted GO
MF GO:0001883 purine nucleoside binding IEP Predicted GO
MF GO:0003746 translation elongation factor activity IEP Predicted GO
MF GO:0003924 GTPase activity IEP Predicted GO
MF GO:0003937 IMP cyclohydrolase activity IEP Predicted GO
MF GO:0004643 phosphoribosylaminoimidazolecarboxamide formyltransferase activity IEP Predicted GO
MF GO:0005525 GTP binding IEP Predicted GO
BP GO:0006414 translational elongation IEP Predicted GO
MF GO:0008097 5S rRNA binding IEP Predicted GO
MF GO:0008135 translation factor activity, RNA binding IEP Predicted GO
MF GO:0016742 hydroxymethyl-, formyl- and related transferase activity IEP Predicted GO
MF GO:0016814 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines IEP Predicted GO
MF GO:0019001 guanyl nucleotide binding IEP Predicted GO
MF GO:0019238 cyclohydrolase activity IEP Predicted GO
MF GO:0019843 rRNA binding IEP Predicted GO
MF GO:0032549 ribonucleoside binding IEP Predicted GO
MF GO:0032550 purine ribonucleoside binding IEP Predicted GO
MF GO:0032561 guanyl ribonucleotide binding IEP Predicted GO
InterPro domains Description Start Stop
IPR013810 Ribosomal_S5_N 95 159
IPR005324 Ribosomal_S5_C 179 251
No external refs found!