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  5. Brara.E00283.1

Brara.E00283.1


Description : RING-H2-class ATL-subclass E3 ubiquitin ligase


Gene families : OG_42_0000003 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.E00283.1
Cluster HCAA Clusters: Cluster_109

Target Alias Description ECC score Gene Family Method Actions
A4A49_38971 No alias ring-h2 finger protein atl72 0.03 Orthogroups_2024-Update
A4A49_59878 No alias ring-h2 finger protein atl60 0.02 Orthogroups_2024-Update
At1g53820 No alias RING-H2 finger protein ATL60... 0.03 Orthogroups_2024-Update
At2g47560 No alias RING-H2 finger protein ATL64... 0.04 Orthogroups_2024-Update
At3g14320 No alias Putative RING-H2 finger protein ATL61... 0.03 Orthogroups_2024-Update
At5g10380 No alias E3 ubiquitin-protein ligase RING1... 0.03 Orthogroups_2024-Update
Bradi4g13960 No alias RING/U-box superfamily protein 0.03 Orthogroups_2024-Update
Brara.A03446.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Brara.C03353.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Brara.D02177.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.03 Orthogroups_2024-Update
Brara.E00442.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Brara.E02957.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Brara.H01648.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.04 Orthogroups_2024-Update
Brara.H02311.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.03 Orthogroups_2024-Update
Cre11.g476250 No alias Zinc finger, C3HC4 type (RING finger) family protein 0.02 Orthogroups_2024-Update
GRMZM2G478553 No alias RING/U-box superfamily protein 0.02 Orthogroups_2024-Update
Glyma.03G203400 No alias RING/U-box superfamily protein 0.03 Orthogroups_2024-Update
Glyma.08G177000 No alias RING/U-box superfamily protein 0.03 Orthogroups_2024-Update
Glyma.09G042400 No alias TOXICOS EN LEVADURA 2 0.03 Orthogroups_2024-Update
Glyma.11G231400 No alias RING/U-box superfamily protein 0.04 Orthogroups_2024-Update
Glyma.11G242500 No alias RING/U-box superfamily protein 0.03 Orthogroups_2024-Update
Glyma.12G208600 No alias RING/U-box superfamily protein 0.03 Orthogroups_2024-Update
Glyma.14G177900 No alias RING/U-box superfamily protein 0.04 Orthogroups_2024-Update
Glyma.18G025700 No alias RING/U-box superfamily protein 0.04 Orthogroups_2024-Update
HORVU0Hr1G016510.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.02 Orthogroups_2024-Update
HORVU3Hr1G028410.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.04 Orthogroups_2024-Update
HORVU4Hr1G082740.1 No alias Unknown function 0.03 Orthogroups_2024-Update
HORVU6Hr1G029910.1 No alias Unknown function 0.02 Orthogroups_2024-Update
LOC_Os01g11460 No alias zinc finger, C3HC4 type domain containing protein, expressed 0.02 Orthogroups_2024-Update
LOC_Os02g15020 No alias zinc finger, C3HC4 type domain containing protein, expressed 0.02 Orthogroups_2024-Update
LOC_Os04g50100 No alias RING-H2 finger protein ATL5G, putative, expressed 0.03 Orthogroups_2024-Update
LOC_Os05g45060 No alias RING-H2 finger protein ATL2M, putative, expressed 0.03 Orthogroups_2024-Update
MA_101154g0010 No alias (at3g16720 : 130.0) RING-H2 protein induced after... 0.03 Orthogroups_2024-Update
MA_10436650g0010 No alias (at1g72310 : 126.0) Encodes a putative RING-H2 zinc... 0.03 Orthogroups_2024-Update
MA_12363g0010 No alias (at1g72310 : 126.0) Encodes a putative RING-H2 zinc... 0.04 Orthogroups_2024-Update
MA_159453g0010 No alias (at1g49230 : 134.0) RING/U-box superfamily protein;... 0.03 Orthogroups_2024-Update
MA_634100g0010 No alias no hits & (original description: no original description) 0.03 Orthogroups_2024-Update
MA_81046g0010 No alias (at1g49230 : 127.0) RING/U-box superfamily protein;... 0.03 Orthogroups_2024-Update
MA_9143538g0010 No alias no hits & (original description: no original description) 0.04 Orthogroups_2024-Update
PSME_00051307-RA No alias (at3g18773 : 100.0) RING/U-box superfamily protein;... 0.02 Orthogroups_2024-Update
PSME_00051567-RA No alias (at3g16720 : 108.0) RING-H2 protein induced after... 0.03 Orthogroups_2024-Update
Potri.001G400600 No alias RING/U-box superfamily protein 0.03 Orthogroups_2024-Update
Potri.002G165200 No alias RING/U-box superfamily protein 0.02 Orthogroups_2024-Update
Potri.013G157000 No alias RING/U-box superfamily protein 0.03 Orthogroups_2024-Update
Pp1s71_162V6 No alias ring finger 0.02 Orthogroups_2024-Update
Sobic.003G147301.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.004G109900.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.02 Orthogroups_2024-Update
Sobic.009G110400.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.010G221100.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Solyc04g009780 No alias RING/U-box superfamily protein (AHRD V3.3 *** A0A061FQW5_THECC) 0.02 Orthogroups_2024-Update
Solyc04g082690 No alias RING/U-box superfamily protein (AHRD V3.3 *** AT1G20823.1) 0.03 Orthogroups_2024-Update
Solyc10g008080 No alias RING/U-box superfamily protein (AHRD V3.3 *** AT2G42350.1) 0.04 Orthogroups_2024-Update
Sopen11g001290 No alias Ring finger domain 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004252 serine-type endopeptidase activity IEP Predicted GO
MF GO:0005337 nucleoside transmembrane transporter activity IEP Predicted GO
BP GO:0005984 disaccharide metabolic process IEP Predicted GO
BP GO:0005985 sucrose metabolic process IEP Predicted GO
BP GO:0005986 sucrose biosynthetic process IEP Predicted GO
MF GO:0008081 phosphoric diester hydrolase activity IEP Predicted GO
BP GO:0009312 oligosaccharide biosynthetic process IEP Predicted GO
BP GO:0015858 nucleoside transport IEP Predicted GO
BP GO:0015931 nucleobase-containing compound transport IEP Predicted GO
MF GO:0015932 nucleobase-containing compound transmembrane transporter activity IEP Predicted GO
MF GO:0019203 carbohydrate phosphatase activity IEP Predicted GO
MF GO:0042578 phosphoric ester hydrolase activity IEP Predicted GO
BP GO:0046351 disaccharide biosynthetic process IEP Predicted GO
MF GO:0050307 sucrose-phosphate phosphatase activity IEP Predicted GO
MF GO:0050308 sugar-phosphatase activity IEP Predicted GO
BP GO:1901264 carbohydrate derivative transport IEP Predicted GO
MF GO:1901505 carbohydrate derivative transmembrane transporter activity IEP Predicted GO
BP GO:1901642 nucleoside transmembrane transport IEP Predicted GO
InterPro domains Description Start Stop
IPR001841 Znf_RING 104 147
No external refs found!