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  5. Brara.E00353.1

Brara.E00353.1


Description : RNA editing factor *(MEF7)


Gene families : OG_42_0009845 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0009845_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.E00353.1
Cluster HCAA Clusters: Cluster_121


Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA 16Dec
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Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEP Predicted GO
MF GO:0001181 RNA polymerase I general transcription initiation factor activity IEP Predicted GO
MF GO:0004066 asparagine synthase (glutamine-hydrolyzing) activity IEP Predicted GO
BP GO:0006334 nucleosome assembly IEP Predicted GO
BP GO:0006361 transcription initiation from RNA polymerase I promoter IEP Predicted GO
BP GO:0006528 asparagine metabolic process IEP Predicted GO
BP GO:0006529 asparagine biosynthetic process IEP Predicted GO
BP GO:0008380 RNA splicing IEP Predicted GO
BP GO:0009059 macromolecule biosynthetic process IEP Predicted GO
BP GO:0009066 aspartate family amino acid metabolic process IEP Predicted GO
BP GO:0009067 aspartate family amino acid biosynthetic process IEP Predicted GO
MF GO:0016879 ligase activity, forming carbon-nitrogen bonds IEP Predicted GO
MF GO:0016884 carbon-nitrogen ligase activity, with glutamine as amido-N-donor IEP Predicted GO
CC GO:0032993 protein-DNA complex IEP Predicted GO
BP GO:0034641 cellular nitrogen compound metabolic process IEP Predicted GO
BP GO:0034728 nucleosome organization IEP Predicted GO
BP GO:0043603 cellular amide metabolic process IEP Predicted GO
BP GO:0043604 amide biosynthetic process IEP Predicted GO
BP GO:0044249 cellular biosynthetic process IEP Predicted GO
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Predicted GO
CC GO:0044815 DNA packaging complex IEP Predicted GO
MF GO:0051087 chaperone binding IEP Predicted GO
BP GO:0065004 protein-DNA complex assembly IEP Predicted GO
BP GO:0071824 protein-DNA complex subunit organization IEP Predicted GO
MF GO:0140110 transcription regulator activity IEP Predicted GO
MF GO:0140223 general transcription initiation factor activity IEP Predicted GO
BP GO:1901566 organonitrogen compound biosynthetic process IEP Predicted GO
BP GO:1901576 organic substance biosynthetic process IEP Predicted GO
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 736 785
IPR002885 Pentatricopeptide_repeat 223 272
IPR002885 Pentatricopeptide_repeat 301 324
IPR002885 Pentatricopeptide_repeat 327 353
IPR002885 Pentatricopeptide_repeat 434 464
IPR002885 Pentatricopeptide_repeat 93 119
IPR002885 Pentatricopeptide_repeat 507 531
IPR002885 Pentatricopeptide_repeat 638 667
IPR002885 Pentatricopeptide_repeat 609 634
IPR002885 Pentatricopeptide_repeat 121 151
IPR002885 Pentatricopeptide_repeat 406 431
IPR032867 DYW_dom 955 1048
No external refs found!