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  5. Brara.E00486.1

Brara.E00486.1


Description : EC_3.2 glycosylase & BZR-type transcription factor


Gene families : OG_42_0000277 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000277_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.E00486.1
Cluster HCAA Clusters: Cluster_137

Target Alias Description ECC score Gene Family Method Actions
A4A49_09217 No alias beta-amylase 3, chloroplastic 0.02 Orthogroups_2024-Update
A4A49_37406 No alias inactive beta-amylase 9 0.03 Orthogroups_2024-Update
At3g23920 No alias Beta-amylase [Source:UniProtKB/TrEMBL;Acc:A0A178VNG4] 0.03 Orthogroups_2024-Update
At5g18670 No alias Inactive beta-amylase 9 [Source:UniProtKB/Swiss-Prot;Acc:Q8VYW2] 0.03 Orthogroups_2024-Update
Bradi1g18390 No alias beta-amylase 3 0.03 Orthogroups_2024-Update
Brara.E01137.1 No alias EC_3.2 glycosylase & beta amylase 0.04 Orthogroups_2024-Update
Brara.G00610.1 No alias EC_3.2 glycosylase & beta amylase 0.02 Orthogroups_2024-Update
GRMZM2G077202 No alias chloroplast beta-amylase 0.02 Orthogroups_2024-Update
Glyma.06G301500 No alias beta-amylase 5 0.06 Orthogroups_2024-Update
HORVU1Hr1G038920.3 No alias beta amylase & EC_3.2 glycosylase 0.02 Orthogroups_2024-Update
Potri.008G204200 No alias beta-amylase 3 0.03 Orthogroups_2024-Update
Sobic.001G226600.2 No alias EC_3.2 glycosylase & beta amylase 0.03 Orthogroups_2024-Update
Solyc01g067660 No alias 1,4-alpha-glucan-maltohydrolase 0.03 Orthogroups_2024-Update
Solyc09g091030 No alias Beta-amylase 1 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
BP GO:0000272 polysaccharide catabolic process IEA 16Dec
MF GO:0016161 beta-amylase activity IEA 16Dec
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Type GO Term Name Evidence Source
CC GO:0000439 transcription factor TFIIH core complex IEP Predicted GO
MF GO:0001671 ATPase activator activity IEP Predicted GO
CC GO:0005667 transcription factor complex IEP Predicted GO
BP GO:0006289 nucleotide-excision repair IEP Predicted GO
MF GO:0008047 enzyme activator activity IEP Predicted GO
CC GO:0044798 nuclear transcription factor complex IEP Predicted GO
MF GO:0046983 protein dimerization activity IEP Predicted GO
MF GO:0060589 nucleoside-triphosphatase regulator activity IEP Predicted GO
MF GO:0060590 ATPase regulator activity IEP Predicted GO
CC GO:0090575 RNA polymerase II transcription factor complex IEP Predicted GO
InterPro domains Description Start Stop
IPR001554 Glyco_hydro_14 237 656
IPR008540 BES1_N 61 195
No external refs found!