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  5. Brara.E00496.1

Brara.E00496.1


Description : component *(uS15) of small ribosomal-subunit (SSU) proteome


Gene families : OG_42_0001410 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001410_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.E00496.1
Cluster HCAA Clusters: Cluster_10

Target Alias Description ECC score Gene Family Method Actions
440805 No alias ribosomal protein S13A 0.07 Orthogroups_2024-Update
A4A49_64599 No alias 40s ribosomal protein s13 0.2 Orthogroups_2024-Update
At3g60770 No alias 40S ribosomal protein S13-1... 0.05 Orthogroups_2024-Update
At4g00100 No alias 40S ribosomal protein S13-2... 0.03 Orthogroups_2024-Update
Bradi3g13800 No alias ribosomal protein S13A 0.09 Orthogroups_2024-Update
Bradi3g13810 No alias ribosomal protein S13A 0.16 Orthogroups_2024-Update
Brara.D00142.1 No alias component *(uS15) of small ribosomal-subunit (SSU) proteome 0.04 Orthogroups_2024-Update
Cre07.g331900 No alias ribosomal protein S13A 0.22 Orthogroups_2024-Update
GRMZM2G112050 No alias ribosomal protein S13A 0.13 Orthogroups_2024-Update
GRMZM2G158034 No alias ribosomal protein S13A 0.12 Orthogroups_2024-Update
GRMZM5G852185 No alias ribosomal protein S13A 0.03 Orthogroups_2024-Update
Glyma.05G052300 No alias ribosomal protein S13A 0.2 Orthogroups_2024-Update
Glyma.05G052400 No alias ribosomal protein S13A 0.05 Orthogroups_2024-Update
Glyma.05G052600 No alias ribosomal protein S13A 0.2 Orthogroups_2024-Update
HORVU7Hr1G075250.1 No alias component *(uS15) of small ribosomal-subunit (SSU) proteome 0.21 Orthogroups_2024-Update
Kfl00229_0020 kfl00229_0020_v1.1 (p62302|rs13_soybn : 266.0) 40S ribosomal protein S13 -... 0.1 Orthogroups_2024-Update
LOC_Os08g02400 No alias 40S ribosomal protein S13, putative, expressed 0.04 Orthogroups_2024-Update
LOC_Os08g02410 No alias 40S ribosomal protein S13, putative, expressed 0.04 Orthogroups_2024-Update
MA_141232g0010 No alias (p62302|rs13_soybn : 291.0) 40S ribosomal protein S13 -... 0.11 Orthogroups_2024-Update
Mp4g03410.1 No alias component RPS13 of SSU proteome 0.24 Orthogroups_2024-Update
PSME_00016280-RA No alias (p62302|rs13_soybn : 256.0) 40S ribosomal protein S13 -... 0.03 Orthogroups_2024-Update
PSME_00021950-RA No alias (p62302|rs13_soybn : 223.0) 40S ribosomal protein S13 -... 0.12 Orthogroups_2024-Update
Potri.002G146800 No alias Ribosomal protein S13/S15 0.07 Orthogroups_2024-Update
Potri.014G068600 No alias Ribosomal protein S13/S15 0.05 Orthogroups_2024-Update
Pp1s39_130V6 No alias 40s ribosomal protein s13 0.29 Orthogroups_2024-Update
Pp1s97_272V6 No alias 40s ribosomal protein s13 0.12 Orthogroups_2024-Update
Seita.6G084900.1 No alias component *(uS15) of small ribosomal-subunit (SSU) proteome 0.17 Orthogroups_2024-Update
Seita.6G085100.1 No alias component *(uS15) of small ribosomal-subunit (SSU) proteome 0.12 Orthogroups_2024-Update
Sobic.002G348100.1 No alias component *(uS15) of small ribosomal-subunit (SSU) proteome 0.09 Orthogroups_2024-Update
Sobic.007G019000.1 No alias component *(uS15) of small ribosomal-subunit (SSU) proteome 0.18 Orthogroups_2024-Update
Sobic.007G019400.1 No alias component *(uS15) of small ribosomal-subunit (SSU) proteome 0.23 Orthogroups_2024-Update
Solyc01g091220 No alias 40S ribosomal protein S13 (AHRD V3.3 *** RS13_SOYBN) 0.04 Orthogroups_2024-Update
Solyc03g083530 No alias 40S ribosomal protein S13 (AHRD V3.3 *** RS13_SOYBN) 0.04 Orthogroups_2024-Update
Solyc05g051000 No alias 40S ribosomal protein S13 (AHRD V3.3 *** RS13_SOYBN) 0.07 Orthogroups_2024-Update
Solyc10g018250 No alias 40S ribosomal protein S13 (AHRD V3.3 *** RS13_SOYBN) 0.06 Orthogroups_2024-Update
Solyc11g072260 No alias 40S ribosomal protein S13 (AHRD V3.3 *** RS13_SOYBN) 0.12 Orthogroups_2024-Update
Sopen01g036970 No alias Ribosomal S13/S15 N-terminal domain 0.05 Orthogroups_2024-Update
Sopen03g023340 No alias Ribosomal S13/S15 N-terminal domain 0.11 Orthogroups_2024-Update
Sopen05g029470 No alias Ribosomal S13/S15 N-terminal domain 0.3 Orthogroups_2024-Update
Sopen11g029930 No alias Ribosomal S13/S15 N-terminal domain 0.06 Orthogroups_2024-Update
evm.model.contig_3443.6 No alias (p62302|rs13_soybn : 220.0) 40S ribosomal protein S13 -... 0.25 Orthogroups_2024-Update
evm.model.tig00000489.15 No alias (p62302|rs13_soybn : 183.0) 40S ribosomal protein S13 -... 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA 16Dec
CC GO:0005840 ribosome IEA 16Dec
BP GO:0006412 translation IEA 16Dec
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Type GO Term Name Evidence Source
MF GO:0004017 adenylate kinase activity IEP Predicted GO
MF GO:0004455 ketol-acid reductoisomerase activity IEP Predicted GO
MF GO:0004637 phosphoribosylamine-glycine ligase activity IEP Predicted GO
BP GO:0006144 purine nucleobase metabolic process IEP Predicted GO
BP GO:0006553 lysine metabolic process IEP Predicted GO
BP GO:0008652 cellular amino acid biosynthetic process IEP Predicted GO
MF GO:0008837 diaminopimelate epimerase activity IEP Predicted GO
BP GO:0009067 aspartate family amino acid biosynthetic process IEP Predicted GO
BP GO:0009081 branched-chain amino acid metabolic process IEP Predicted GO
BP GO:0009082 branched-chain amino acid biosynthetic process IEP Predicted GO
BP GO:0009085 lysine biosynthetic process IEP Predicted GO
BP GO:0009089 lysine biosynthetic process via diaminopimelate IEP Predicted GO
BP GO:0009112 nucleobase metabolic process IEP Predicted GO
BP GO:0009113 purine nucleobase biosynthetic process IEP Predicted GO
MF GO:0016776 phosphotransferase activity, phosphate group as acceptor IEP Predicted GO
MF GO:0016854 racemase and epimerase activity IEP Predicted GO
MF GO:0016855 racemase and epimerase activity, acting on amino acids and derivatives IEP Predicted GO
MF GO:0019205 nucleobase-containing compound kinase activity IEP Predicted GO
MF GO:0036361 racemase activity, acting on amino acids and derivatives IEP Predicted GO
BP GO:0042440 pigment metabolic process IEP Predicted GO
BP GO:0043648 dicarboxylic acid metabolic process IEP Predicted GO
BP GO:0046112 nucleobase biosynthetic process IEP Predicted GO
BP GO:0046148 pigment biosynthetic process IEP Predicted GO
BP GO:0046451 diaminopimelate metabolic process IEP Predicted GO
MF GO:0047661 amino-acid racemase activity IEP Predicted GO
MF GO:0050145 nucleoside monophosphate kinase activity IEP Predicted GO
InterPro domains Description Start Stop
IPR000589 Ribosomal_S15 74 145
IPR012606 Ribosomal_S13/S15_N 1 60
No external refs found!