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  5. Brara.E00530.1

Brara.E00530.1


Description : LIM-type transcription factor


Gene families : OG_42_0000555 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000555_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.E00530.1
Cluster HCAA Clusters: Cluster_12

Target Alias Description ECC score Gene Family Method Actions
Bradi5g16666 No alias GATA type zinc finger transcription factor family protein 0.02 Orthogroups_2024-Update
Glyma.05G205800 No alias GATA type zinc finger transcription factor family protein 0.04 Orthogroups_2024-Update
Glyma.17G092600 No alias GATA type zinc finger transcription factor family protein 0.04 Orthogroups_2024-Update
HORVU6Hr1G060580.1 No alias LIM-type transcription factor 0.03 Orthogroups_2024-Update
Potri.003G124300 No alias GATA type zinc finger transcription factor family protein 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004089 carbonate dehydratase activity IEP Predicted GO
MF GO:0004506 squalene monooxygenase activity IEP Predicted GO
MF GO:0005319 lipid transporter activity IEP Predicted GO
MF GO:0005544 calcium-dependent phospholipid binding IEP Predicted GO
CC GO:0005737 cytoplasm IEP Predicted GO
BP GO:0006869 lipid transport IEP Predicted GO
MF GO:0008200 ion channel inhibitor activity IEP Predicted GO
MF GO:0016247 channel regulator activity IEP Predicted GO
MF GO:0016248 channel inhibitor activity IEP Predicted GO
MF GO:0017080 sodium channel regulator activity IEP Predicted GO
MF GO:0019871 sodium channel inhibitor activity IEP Predicted GO
MF GO:0033925 mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase activity IEP Predicted GO
BP GO:0061024 membrane organization IEP Predicted GO
MF GO:0099106 ion channel regulator activity IEP Predicted GO
BP GO:0120009 intermembrane lipid transfer IEP Predicted GO
MF GO:0120013 intermembrane lipid transfer activity IEP Predicted GO
InterPro domains Description Start Stop
IPR001781 Znf_LIM 10 65
IPR001781 Znf_LIM 106 161
No external refs found!