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  5. Brara.E00686.1

Brara.E00686.1


Description : component *(SCAR) of SCAR/WAVE ARP2/3-activating complex


Gene families : OG_42_0001729 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001729_tree

Sequence : coding (download), protein (download)


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Type Description Actions
Neighborhood Brassica rapa: Brara.E00686.1
Cluster HCAA Clusters: Cluster_160

Target Alias Description ECC score Gene Family Method Actions
GRMZM2G104534 No alias SCAR homolog 2 0.03 Orthogroups_2024-Update
LOC_Os01g11040 No alias SCAR-like protein 2, putative, expressed 0.02 Orthogroups_2024-Update
Solyc09g014980 No alias Protein SCAR2, putative (AHRD V3.3 *-* B9SL38_RICCO) 0.03 Orthogroups_2024-Update
Sopen02g021740 No alias hypothetical protein 0.03 Orthogroups_2024-Update
Sopen09g007960 No alias hypothetical protein 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0003729 mRNA binding IEP Predicted GO
MF GO:0003916 DNA topoisomerase activity IEP Predicted GO
MF GO:0005488 binding IEP Predicted GO
CC GO:0005685 U1 snRNP IEP Predicted GO
BP GO:0006265 DNA topological change IEP Predicted GO
BP GO:0006376 mRNA splice site selection IEP Predicted GO
BP GO:0006891 intra-Golgi vesicle-mediated transport IEP Predicted GO
MF GO:0009982 pseudouridine synthase activity IEP Predicted GO
CC GO:0017119 Golgi transport complex IEP Predicted GO
BP GO:0022618 ribonucleoprotein complex assembly IEP Predicted GO
CC GO:0030532 small nuclear ribonucleoprotein complex IEP Predicted GO
CC GO:0035145 exon-exon junction complex IEP Predicted GO
CC GO:0044428 nuclear part IEP Predicted GO
BP GO:0071826 ribonucleoprotein complex subunit organization IEP Predicted GO
CC GO:0097525 spliceosomal snRNP complex IEP Predicted GO
CC GO:0120114 Sm-like protein family complex IEP Predicted GO

No InterPro domains available for this sequence

No external refs found!