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  5. Brara.E00702.1

Brara.E00702.1


Description : regulatory E3 ubiquitin ligase (APD) involved in gametogenesis


Gene families : OG_42_0002445 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002445_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.E00702.1
Cluster HCAA Clusters: Cluster_165

Target Alias Description ECC score Gene Family Method Actions
A4A49_40115 No alias hypothetical protein 0.03 Orthogroups_2024-Update
At2g38185 No alias RING/U-box superfamily protein... 0.05 Orthogroups_2024-Update
Brara.A01425.1 No alias Unknown function 0.03 Orthogroups_2024-Update
LOC_Os05g44550 No alias zinc finger family protein, putative, expressed 0.03 Orthogroups_2024-Update
Sopen09g001290 No alias hypothetical protein 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0006835 dicarboxylic acid transport IEP Predicted GO
MF GO:0010333 terpene synthase activity IEP Predicted GO
BP GO:0015711 organic anion transport IEP Predicted GO
BP GO:0015740 C4-dicarboxylate transport IEP Predicted GO
BP GO:0015743 malate transport IEP Predicted GO
BP GO:0015849 organic acid transport IEP Predicted GO
MF GO:0016838 carbon-oxygen lyase activity, acting on phosphates IEP Predicted GO
CC GO:0030119 AP-type membrane coat adaptor complex IEP Predicted GO
CC GO:0030131 clathrin adaptor complex IEP Predicted GO
BP GO:0046942 carboxylic acid transport IEP Predicted GO
BP GO:0048364 root development IEP Predicted GO
BP GO:0048367 shoot system development IEP Predicted GO
BP GO:0048731 system development IEP Predicted GO
BP GO:0071702 organic substance transport IEP Predicted GO
BP GO:0099402 plant organ development IEP Predicted GO
InterPro domains Description Start Stop
IPR032010 DUF4793 125 233
IPR032008 DUF4792 41 104
No external refs found!