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  5. Brara.E00798.1

Brara.E00798.1


Description : Unknown function


Gene families : OG_42_0004020 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0004020_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.E00798.1
Cluster HCAA Clusters: Cluster_347

Target Alias Description ECC score Gene Family Method Actions
Bradi4g35376 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Brara.D01246.1 No alias Unknown function 0.03 Orthogroups_2024-Update
PSME_00050135-RA No alias (at2g13600 : 432.0) Pentatricopeptide repeat (PPR)... 0.03 Orthogroups_2024-Update
Seita.2G278000.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sopen01g043860 No alias PPR repeat family 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000062 fatty-acyl-CoA binding IEP Predicted GO
MF GO:0004252 serine-type endopeptidase activity IEP Predicted GO
MF GO:0004576 oligosaccharyl transferase activity IEP Predicted GO
MF GO:0005484 SNAP receptor activity IEP Predicted GO
CC GO:0005759 mitochondrial matrix IEP Predicted GO
BP GO:0006486 protein glycosylation IEP Predicted GO
BP GO:0006890 retrograde vesicle-mediated transport, Golgi to ER IEP Predicted GO
CC GO:0031974 membrane-enclosed lumen IEP Predicted GO
MF GO:0033218 amide binding IEP Predicted GO
CC GO:0043233 organelle lumen IEP Predicted GO
BP GO:0043413 macromolecule glycosylation IEP Predicted GO
BP GO:0048193 Golgi vesicle transport IEP Predicted GO
CC GO:0070013 intracellular organelle lumen IEP Predicted GO
MF GO:1901567 fatty acid derivative binding IEP Predicted GO
MF GO:1901681 sulfur compound binding IEP Predicted GO
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 13 33
IPR002885 Pentatricopeptide_repeat 139 167
IPR002885 Pentatricopeptide_repeat 376 400
IPR002885 Pentatricopeptide_repeat 109 131
IPR002885 Pentatricopeptide_repeat 171 216
IPR002885 Pentatricopeptide_repeat 300 347
IPR002885 Pentatricopeptide_repeat 401 448
IPR002885 Pentatricopeptide_repeat 34 81
No external refs found!