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  5. Brara.E00866.1

Brara.E00866.1


Description : RAV/NGATHA-type transcription factor


Gene families : OG_42_0000305 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000305_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.E00866.1
Cluster HCAA Clusters: Cluster_143

Target Alias Description ECC score Gene Family Method Actions
At1g68840 No alias TEM2 [Source:UniProtKB/TrEMBL;Acc:A0A178WNP0] 0.06 Orthogroups_2024-Update
At5g06250 No alias AP2/B3-like transcriptional factor family protein... 0.03 Orthogroups_2024-Update
Brara.E00098.1 No alias RAV/NGATHA-type transcription factor 0.04 Orthogroups_2024-Update
Brara.E02919.1 No alias RAV/NGATHA-type transcription factor 0.03 Orthogroups_2024-Update
Brara.J00079.1 No alias RAV/NGATHA-type transcription factor 0.03 Orthogroups_2024-Update
Glyma.01G087500 No alias AP2/B3 transcription factor family protein 0.03 Orthogroups_2024-Update
Glyma.02G099500 No alias AP2/B3 transcription factor family protein 0.03 Orthogroups_2024-Update
Glyma.10G204400 No alias AP2/B3 transcription factor family protein 0.03 Orthogroups_2024-Update
HORVU1Hr1G082670.6 No alias RAV/NGATHA-type transcription factor & AP2-RAV-type... 0.03 Orthogroups_2024-Update
LOC_Os05g47650 No alias B3 DNA binding domain containing protein, expressed 0.02 Orthogroups_2024-Update
MA_10433425g0010 No alias (at1g25560 : 91.3) Encodes a member of the RAV... 0.04 Orthogroups_2024-Update
MA_178646g0010 No alias (at1g68840 : 271.0) Rav2 is part of a complex that has... 0.03 Orthogroups_2024-Update
Mp2g22250.1 No alias transcription factor (RAV/NGATHA). transcription factor (AP2-RAV) 0.02 Orthogroups_2024-Update
PSME_00032471-RA No alias (at1g68840 : 300.0) Rav2 is part of a complex that has... 0.03 Orthogroups_2024-Update
Potri.016G074500 No alias AP2/B3-like transcriptional factor family protein 0.04 Orthogroups_2024-Update
Sopen05g005620 No alias B3 DNA binding domain 0.03 Orthogroups_2024-Update
Sopen10g032690 No alias B3 DNA binding domain 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA 16Dec
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Type GO Term Name Evidence Source
MF GO:0004356 glutamate-ammonia ligase activity IEP Predicted GO
MF GO:0005384 manganese ion transmembrane transporter activity IEP Predicted GO
BP GO:0006541 glutamine metabolic process IEP Predicted GO
BP GO:0006542 glutamine biosynthetic process IEP Predicted GO
BP GO:0006873 cellular ion homeostasis IEP Predicted GO
BP GO:0006875 cellular metal ion homeostasis IEP Predicted GO
BP GO:0009064 glutamine family amino acid metabolic process IEP Predicted GO
BP GO:0009084 glutamine family amino acid biosynthetic process IEP Predicted GO
MF GO:0016211 ammonia ligase activity IEP Predicted GO
MF GO:0016880 acid-ammonia (or amide) ligase activity IEP Predicted GO
BP GO:0019725 cellular homeostasis IEP Predicted GO
BP GO:0030003 cellular cation homeostasis IEP Predicted GO
BP GO:0030026 cellular manganese ion homeostasis IEP Predicted GO
CC GO:0033178 proton-transporting two-sector ATPase complex, catalytic domain IEP Predicted GO
MF GO:0046915 transition metal ion transmembrane transporter activity IEP Predicted GO
BP GO:0046916 cellular transition metal ion homeostasis IEP Predicted GO
MF GO:0046983 protein dimerization activity IEP Predicted GO
BP GO:0048878 chemical homeostasis IEP Predicted GO
BP GO:0050801 ion homeostasis IEP Predicted GO
BP GO:0055065 metal ion homeostasis IEP Predicted GO
BP GO:0055071 manganese ion homeostasis IEP Predicted GO
BP GO:0055076 transition metal ion homeostasis IEP Predicted GO
BP GO:0055080 cation homeostasis IEP Predicted GO
BP GO:0055082 cellular chemical homeostasis IEP Predicted GO
BP GO:0098771 inorganic ion homeostasis IEP Predicted GO
InterPro domains Description Start Stop
IPR003340 B3_DNA-bd 39 144
No external refs found!