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  5. Brara.E00914.1

Brara.E00914.1


Description : RNA editing factor *(MORF)


Gene families : OG_42_0000510 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000510_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.E00914.1
Cluster HCAA Clusters: Cluster_32

Target Alias Description ECC score Gene Family Method Actions
At1g11430 No alias Multiple organellar RNA editing factor 9, chloroplastic... 0.04 Orthogroups_2024-Update
At4g20020 No alias Multiple organellar RNA editing factor 1, mitochondrial... 0.04 Orthogroups_2024-Update
Bradi3g14650 No alias plastid developmental protein DAG, putative 0.04 Orthogroups_2024-Update
Bradi4g22160 No alias Function unknown 0.07 Orthogroups_2024-Update
Bradi5g20660 No alias differentiation and greening-like 1 0.05 Orthogroups_2024-Update
Brara.E02636.1 No alias RNA editing factor *(MORF) 0.03 Orthogroups_2024-Update
Brara.G00411.1 No alias RNA editing factor *(MORF) 0.04 Orthogroups_2024-Update
GRMZM2G003765 No alias plastid developmental protein DAG, putative 0.04 Orthogroups_2024-Update
Glyma.06G044500 No alias differentiation and greening-like 1 0.01 Orthogroups_2024-Update
Glyma.12G169200 No alias Function unknown 0.03 Orthogroups_2024-Update
Glyma.12G228400 No alias cobalt ion binding 0.04 Orthogroups_2024-Update
Glyma.13G271400 No alias cobalt ion binding 0.07 Orthogroups_2024-Update
HORVU4Hr1G016440.1 No alias RNA editing factor *(MORF) 0.04 Orthogroups_2024-Update
HORVU7Hr1G008880.2 No alias RNA editing factor *(MORF) 0.02 Orthogroups_2024-Update
HORVU7Hr1G073170.2 No alias RNA editing factor *(MORF) 0.05 Orthogroups_2024-Update
LOC_Os09g04670 No alias DAG protein, chloroplast precursor, putative, expressed 0.03 Orthogroups_2024-Update
Potri.001G393400 No alias cobalt ion binding 0.04 Orthogroups_2024-Update
Potri.003G015100 No alias Function unknown 0.03 Orthogroups_2024-Update
Potri.011G112200 No alias cobalt ion binding 0.03 Orthogroups_2024-Update
Seita.4G012800.1 No alias RNA editing factor *(MORF) 0.07 Orthogroups_2024-Update
Seita.4G211100.1 No alias RNA editing factor *(MORF) 0.04 Orthogroups_2024-Update
Seita.6G225500.1 No alias RNA editing factor *(MORF) 0.07 Orthogroups_2024-Update
Seita.7G238200.1 No alias RNA editing factor *(MORF) 0.02 Orthogroups_2024-Update
Seita.8G095000.1 No alias RNA editing factor *(MORF) 0.08 Orthogroups_2024-Update
Sobic.001G485600.1 No alias RNA editing factor *(MORF) 0.04 Orthogroups_2024-Update
Sobic.005G100900.1 No alias RNA editing factor *(MORF) 0.05 Orthogroups_2024-Update
Sobic.006G204100.1 No alias RNA editing factor *(MORF) 0.03 Orthogroups_2024-Update
Sobic.007G034500.1 No alias RNA editing factor *(MORF) 0.05 Orthogroups_2024-Update
Sobic.010G013900.1 No alias RNA editing factor *(MORF) 0.07 Orthogroups_2024-Update
Solyc01g066060 No alias DAG protein (AHRD V3.3 *** K7TSG0_MAIZE) 0.05 Orthogroups_2024-Update
Solyc02g079210 No alias DAG protein (AHRD V3.3 *** B6SJX7_MAIZE) 0.09 Orthogroups_2024-Update
Solyc05g054960 No alias Peroxisome biogenesis protein 12 (AHRD V3.3 *** K4C2H2_SOLLC) 0.07 Orthogroups_2024-Update
Solyc10g007180 No alias DAG protein (AHRD V3.3 *** A0A0K9PW98_ZOSMR) 0.04 Orthogroups_2024-Update
Solyc12g014230 No alias DAG protein (AHRD V3.3 *** A0A0K9PW98_ZOSMR) 0.04 Orthogroups_2024-Update
Sopen02g024540 No alias hypothetical protein 0.03 Orthogroups_2024-Update
Sopen05g033420 No alias hypothetical protein 0.04 Orthogroups_2024-Update
Sopen10g003300 No alias hypothetical protein 0.06 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Predicted GO
MF GO:0001882 nucleoside binding IEP Predicted GO
MF GO:0001883 purine nucleoside binding IEP Predicted GO
BP GO:0002097 tRNA wobble base modification IEP Predicted GO
BP GO:0002098 tRNA wobble uridine modification IEP Predicted GO
MF GO:0003676 nucleic acid binding IEP Predicted GO
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Predicted GO
MF GO:0003922 GMP synthase (glutamine-hydrolyzing) activity IEP Predicted GO
MF GO:0003924 GTPase activity IEP Predicted GO
MF GO:0004133 glycogen debranching enzyme activity IEP Predicted GO
MF GO:0004134 4-alpha-glucanotransferase activity IEP Predicted GO
MF GO:0004175 endopeptidase activity IEP Predicted GO
MF GO:0004252 serine-type endopeptidase activity IEP Predicted GO
MF GO:0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity IEP Predicted GO
MF GO:0004518 nuclease activity IEP Predicted GO
MF GO:0004540 ribonuclease activity IEP Predicted GO
MF GO:0004748 ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor IEP Predicted GO
MF GO:0005488 binding IEP Predicted GO
MF GO:0005524 ATP binding IEP Predicted GO
MF GO:0005525 GTP binding IEP Predicted GO
CC GO:0005759 mitochondrial matrix IEP Predicted GO
BP GO:0006139 nucleobase-containing compound metabolic process IEP Predicted GO
BP GO:0006177 GMP biosynthetic process IEP Predicted GO
BP GO:0006260 DNA replication IEP Predicted GO
BP GO:0006351 transcription, DNA-templated IEP Predicted GO
BP GO:0006396 RNA processing IEP Predicted GO
BP GO:0006400 tRNA modification IEP Predicted GO
BP GO:0006457 protein folding IEP Predicted GO
BP GO:0006725 cellular aromatic compound metabolic process IEP Predicted GO
MF GO:0008144 drug binding IEP Predicted GO
MF GO:0008649 rRNA methyltransferase activity IEP Predicted GO
BP GO:0009058 biosynthetic process IEP Predicted GO
BP GO:0009059 macromolecule biosynthetic process IEP Predicted GO
BP GO:0009116 nucleoside metabolic process IEP Predicted GO
BP GO:0009119 ribonucleoside metabolic process IEP Predicted GO
BP GO:0009163 nucleoside biosynthetic process IEP Predicted GO
BP GO:0009451 RNA modification IEP Predicted GO
MF GO:0009982 pseudouridine synthase activity IEP Predicted GO
BP GO:0016070 RNA metabolic process IEP Predicted GO
MF GO:0016462 pyrophosphatase activity IEP Predicted GO
MF GO:0016646 oxidoreductase activity, acting on the CH-NH group of donors, NAD or NADP as acceptor IEP Predicted GO
MF GO:0016725 oxidoreductase activity, acting on CH or CH2 groups IEP Predicted GO
MF GO:0016728 oxidoreductase activity, acting on CH or CH2 groups, disulfide as acceptor IEP Predicted GO
MF GO:0016779 nucleotidyltransferase activity IEP Predicted GO
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Predicted GO
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Predicted GO
MF GO:0016879 ligase activity, forming carbon-nitrogen bonds IEP Predicted GO
MF GO:0016881 acid-amino acid ligase activity IEP Predicted GO
MF GO:0016884 carbon-nitrogen ligase activity, with glutamine as amido-N-donor IEP Predicted GO
MF GO:0016887 ATPase activity IEP Predicted GO
MF GO:0017076 purine nucleotide binding IEP Predicted GO
MF GO:0017111 nucleoside-triphosphatase activity IEP Predicted GO
MF GO:0019001 guanyl nucleotide binding IEP Predicted GO
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Predicted GO
MF GO:0030554 adenyl nucleotide binding IEP Predicted GO
CC GO:0031974 membrane-enclosed lumen IEP Predicted GO
MF GO:0032549 ribonucleoside binding IEP Predicted GO
MF GO:0032550 purine ribonucleoside binding IEP Predicted GO
MF GO:0032553 ribonucleotide binding IEP Predicted GO
MF GO:0032555 purine ribonucleotide binding IEP Predicted GO
MF GO:0032559 adenyl ribonucleotide binding IEP Predicted GO
MF GO:0032561 guanyl ribonucleotide binding IEP Predicted GO
CC GO:0033588 Elongator holoenzyme complex IEP Predicted GO
MF GO:0034062 5'-3' RNA polymerase activity IEP Predicted GO
BP GO:0034470 ncRNA processing IEP Predicted GO
BP GO:0034641 cellular nitrogen compound metabolic process IEP Predicted GO
BP GO:0034645 cellular macromolecule biosynthetic process IEP Predicted GO
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP Predicted GO
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Predicted GO
MF GO:0036094 small molecule binding IEP Predicted GO
BP GO:0042254 ribosome biogenesis IEP Predicted GO
BP GO:0042278 purine nucleoside metabolic process IEP Predicted GO
BP GO:0042451 purine nucleoside biosynthetic process IEP Predicted GO
BP GO:0042455 ribonucleoside biosynthetic process IEP Predicted GO
MF GO:0043167 ion binding IEP Predicted GO
MF GO:0043168 anion binding IEP Predicted GO
CC GO:0043227 membrane-bounded organelle IEP Predicted GO
CC GO:0043231 intracellular membrane-bounded organelle IEP Predicted GO
CC GO:0043233 organelle lumen IEP Predicted GO
CC GO:0044424 intracellular part IEP Predicted GO
CC GO:0044429 mitochondrial part IEP Predicted GO
BP GO:0046037 GMP metabolic process IEP Predicted GO
BP GO:0046128 purine ribonucleoside metabolic process IEP Predicted GO
BP GO:0046129 purine ribonucleoside biosynthetic process IEP Predicted GO
BP GO:0046483 heterocycle metabolic process IEP Predicted GO
MF GO:0051082 unfolded protein binding IEP Predicted GO
MF GO:0061731 ribonucleoside-diphosphate reductase activity IEP Predicted GO
CC GO:0070013 intracellular organelle lumen IEP Predicted GO
BP GO:0090304 nucleic acid metabolic process IEP Predicted GO
MF GO:0097159 organic cyclic compound binding IEP Predicted GO
MF GO:0097367 carbohydrate derivative binding IEP Predicted GO
BP GO:0097659 nucleic acid-templated transcription IEP Predicted GO
MF GO:0097747 RNA polymerase activity IEP Predicted GO
MF GO:0140098 catalytic activity, acting on RNA IEP Predicted GO
MF GO:0140102 catalytic activity, acting on a rRNA IEP Predicted GO
BP GO:1901068 guanosine-containing compound metabolic process IEP Predicted GO
BP GO:1901070 guanosine-containing compound biosynthetic process IEP Predicted GO
MF GO:1901265 nucleoside phosphate binding IEP Predicted GO
BP GO:1901360 organic cyclic compound metabolic process IEP Predicted GO
MF GO:1901363 heterocyclic compound binding IEP Predicted GO
BP GO:1901657 glycosyl compound metabolic process IEP Predicted GO
BP GO:1901659 glycosyl compound biosynthetic process IEP Predicted GO

No InterPro domains available for this sequence

No external refs found!