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  5. Brara.E00977.1

Brara.E00977.1


Description : component *(eL20) of large ribosomal-subunit (LSU) proteome


Gene families : OG_42_0001510 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001510_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.E00977.1
Cluster HCAA Clusters: Cluster_8

Target Alias Description ECC score Gene Family Method Actions
227198 No alias Ribosomal protein L18ae/LX family protein 0.14 Orthogroups_2024-Update
A4A49_41727 No alias 60s ribosomal protein l18a 0.12 Orthogroups_2024-Update
A4A49_56604 No alias 60s ribosomal protein l18a 0.13 Orthogroups_2024-Update
At2g34480 No alias Ribosomal protein L18ae/LX family protein... 0.04 Orthogroups_2024-Update
Bradi2g16430 No alias Ribosomal protein L18ae/LX family protein 0.26 Orthogroups_2024-Update
Bradi2g46010 No alias Ribosomal protein L18ae/LX family protein 0.2 Orthogroups_2024-Update
Bradi2g50020 No alias Ribosomal protein L18ae/LX family protein 0.12 Orthogroups_2024-Update
Cre01.g047750 No alias Ribosomal protein L18ae/LX family protein 0.21 Orthogroups_2024-Update
GRMZM2G022619 No alias Ribosomal protein L18ae/LX family protein 0.13 Orthogroups_2024-Update
Glyma.14G029901 No alias Ribosomal protein L18ae/LX family protein 0.12 Orthogroups_2024-Update
Glyma.15G095400 No alias Ribosomal protein L18ae/LX family protein 0.09 Orthogroups_2024-Update
Glyma.18G110000 No alias Ribosomal protein L18ae/LX family protein 0.06 Orthogroups_2024-Update
HORVU1Hr1G088040.2 No alias component *(eL20) of large ribosomal-subunit (LSU) proteome 0.23 Orthogroups_2024-Update
HORVU3Hr1G060800.1 No alias component *(eL20) of large ribosomal-subunit (LSU) proteome 0.03 Orthogroups_2024-Update
Kfl00905_0040 kfl00905_0040_v1.1 (at2g34480 : 295.0) Ribosomal protein L18ae/LX family... 0.03 Orthogroups_2024-Update
LOC_Os01g47660 No alias 60S ribosomal protein L18a, putative, expressed 0.07 Orthogroups_2024-Update
LOC_Os01g54870 No alias 60S ribosomal protein L18a, putative, expressed 0.05 Orthogroups_2024-Update
LOC_Os05g49030 No alias 60S ribosomal protein L18a, putative, expressed 0.03 Orthogroups_2024-Update
MA_12029g0010 No alias (q943f3|rl18a_orysa : 339.0) 60S ribosomal protein L18a... 0.11 Orthogroups_2024-Update
Mp1g17730.1 No alias component RPL18a of LSU proteome component 0.15 Orthogroups_2024-Update
PSME_00023758-RA No alias (q943f3|rl18a_orysa : 335.0) 60S ribosomal protein L18a... 0.05 Orthogroups_2024-Update
Potri.002G057600 No alias Ribosomal protein L18ae/LX family protein 0.18 Orthogroups_2024-Update
Potri.004G063400 No alias Ribosomal protein L18ae/LX family protein 0.05 Orthogroups_2024-Update
Pp1s184_111V6 No alias 60s ribosomal protein l18a 0.27 Orthogroups_2024-Update
Pp1s44_13V6 No alias 60s ribosomal protein l18a 0.07 Orthogroups_2024-Update
Pp1s56_243V6 No alias 60s ribosomal protein l18a 0.1 Orthogroups_2024-Update
Pp1s74_193V6 No alias 60s ribosomal protein l18a 0.34 Orthogroups_2024-Update
Seita.3G145500.1 No alias component *(eL20) of large ribosomal-subunit (LSU) proteome 0.15 Orthogroups_2024-Update
Seita.5G262600.1 No alias component *(eL20) of large ribosomal-subunit (LSU) proteome 0.03 Orthogroups_2024-Update
Seita.8G085600.1 No alias component *(eL20) of large ribosomal-subunit (LSU) proteome 0.07 Orthogroups_2024-Update
Sobic.003G249700.1 No alias component *(eL20) of large ribosomal-subunit (LSU) proteome 0.25 Orthogroups_2024-Update
Sobic.005G091700.1 No alias component *(eL20) of large ribosomal-subunit (LSU) proteome 0.25 Orthogroups_2024-Update
Sobic.009G233400.1 No alias component *(eL20) of large ribosomal-subunit (LSU) proteome 0.29 Orthogroups_2024-Update
Solyc02g070640 No alias 60S ribosomal protein L18a (AHRD V3.3 *** Q3HRW8_SOLTU) 0.37 Orthogroups_2024-Update
Solyc02g070650 No alias 60S ribosomal protein L18a (AHRD V3.3 *** Q3HRW8_SOLTU) 0.32 Orthogroups_2024-Update
Solyc06g065590 No alias 60S ribosomal protein L18a (AHRD V3.3 *** K4C7I8_SOLLC) 0.15 Orthogroups_2024-Update
Solyc08g016180 No alias 60S ribosomal protein L18a (AHRD V3.3 *** K4CJE2_SOLLC) 0.3 Orthogroups_2024-Update
Sopen02g019720 No alias Ribosomal L18ae/LX protein domain 0.07 Orthogroups_2024-Update
Sopen02g019730 No alias Ribosomal L18ae/LX protein domain 0.18 Orthogroups_2024-Update
Sopen06g024090 No alias Ribosomal L18ae/LX protein domain 0.13 Orthogroups_2024-Update
Sopen08g006530 No alias Ribosomal L18ae/LX protein domain 0.33 Orthogroups_2024-Update
evm.model.contig_448.2 No alias (q943f3|rl18a_orysa : 186.0) 60S ribosomal protein L18a... 0.34 Orthogroups_2024-Update
evm.model.tig00000615.59 No alias (at1g29970 : 221.0) 60S ribosomal protein L18A-1;... 0.23 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA 16Dec
CC GO:0005840 ribosome IEA 16Dec
BP GO:0006412 translation IEA 16Dec
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Type GO Term Name Evidence Source
CC GO:0000276 mitochondrial proton-transporting ATP synthase complex, coupling factor F(o) IEP Predicted GO
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0003746 translation elongation factor activity IEP Predicted GO
BP GO:0006414 translational elongation IEP Predicted GO
MF GO:0008097 5S rRNA binding IEP Predicted GO
CC GO:0015934 large ribosomal subunit IEP Predicted GO
MF GO:0019843 rRNA binding IEP Predicted GO
CC GO:0044391 ribosomal subunit IEP Predicted GO
CC GO:0045263 proton-transporting ATP synthase complex, coupling factor F(o) IEP Predicted GO
InterPro domains Description Start Stop
IPR023573 Ribosomal_L18a//L18Ae/LX 7 128
No external refs found!