Description : Unknown function
Gene families : OG_42_0000001 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | Brassica rapa: Brara.E00983.1 | |
Cluster | HCAA Clusters: Cluster_282 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
Bradi2g03730 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.04 | Orthogroups_2024-Update | |
Glyma.01G176700 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.03 | Orthogroups_2024-Update | |
Glyma.06G161900 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.03 | Orthogroups_2024-Update | |
LOC_Os07g20420 | No alias | tetratricopeptide-like helical, putative, expressed | 0.03 | Orthogroups_2024-Update | |
LOC_Os08g04400 | No alias | pentatricopeptide repeat domain containing protein,... | 0.03 | Orthogroups_2024-Update | |
MA_10429371g0010 | No alias | (at3g57430 : 716.0) Encodes a chloroplast RNA editing... | 0.04 | Orthogroups_2024-Update | |
MA_13057g0010 | No alias | (at4g33170 : 800.0) Tetratricopeptide repeat (TPR)-like... | 0.04 | Orthogroups_2024-Update | |
MA_50118g0010 | No alias | (at3g03580 : 671.0) Tetratricopeptide repeat (TPR)-like... | 0.03 | Orthogroups_2024-Update | |
PSME_00032959-RA | No alias | (at3g46790 : 529.0) Encodes a member of a PCMP (plant... | 0.03 | Orthogroups_2024-Update | |
Seita.3G267700.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
Seita.7G293800.1 | No alias | RNA editing factor *(REME2/PGL1) | 0.03 | Orthogroups_2024-Update | |
Sobic.007G137800.3 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
Sobic.009G241200.3 | No alias | RNA editing factor *(ECB2/VAC1) | 0.03 | Orthogroups_2024-Update | |
Solyc03g119950 | No alias | Pentatricopeptide repeat-containing family protein (AHRD... | 0.03 | Orthogroups_2024-Update | |
Sopen01g037380 | No alias | PPR repeat | 0.03 | Orthogroups_2024-Update | |
Sopen03g003770 | No alias | PPR repeat family | 0.03 | Orthogroups_2024-Update | |
Sopen03g038010 | No alias | PPR repeat | 0.03 | Orthogroups_2024-Update | |
Sopen07g022420 | No alias | PPR repeat family | 0.03 | Orthogroups_2024-Update | |
Sopen11g026910 | No alias | PPR repeat family | 0.02 | Orthogroups_2024-Update |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
No GO annotation available for this sequence |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
BP | GO:0000375 | RNA splicing, via transesterification reactions | IEP | Predicted GO |
BP | GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | IEP | Predicted GO |
BP | GO:0000398 | mRNA splicing, via spliceosome | IEP | Predicted GO |
MF | GO:0004089 | carbonate dehydratase activity | IEP | Predicted GO |
MF | GO:0004559 | alpha-mannosidase activity | IEP | Predicted GO |
MF | GO:0004571 | mannosyl-oligosaccharide 1,2-alpha-mannosidase activity | IEP | Predicted GO |
MF | GO:0008270 | zinc ion binding | IEP | Predicted GO |
BP | GO:0008380 | RNA splicing | IEP | Predicted GO |
MF | GO:0015923 | mannosidase activity | IEP | Predicted GO |
MF | GO:0015924 | mannosyl-oligosaccharide mannosidase activity | IEP | Predicted GO |
MF | GO:0016836 | hydro-lyase activity | IEP | Predicted GO |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR012419 | Cas1_AcylTrans_dom | 657 | 742 |
IPR012419 | Cas1_AcylTrans_dom | 775 | 823 |
IPR002885 | Pentatricopeptide_repeat | 292 | 338 |
IPR002885 | Pentatricopeptide_repeat | 190 | 238 |
IPR002885 | Pentatricopeptide_repeat | 392 | 437 |
IPR002885 | Pentatricopeptide_repeat | 464 | 487 |
IPR002885 | Pentatricopeptide_repeat | 268 | 291 |
IPR002885 | Pentatricopeptide_repeat | 367 | 391 |
No external refs found! |