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  5. Brara.E01238.1

Brara.E01238.1


Description : E3 ubiquitin ligase *(SINA)


Gene families : OG_42_0000590 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000590_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.E01238.1
Cluster HCAA Clusters: Cluster_404

Target Alias Description ECC score Gene Family Method Actions
At1g66630 No alias E3 ubiquitin-protein ligase SINA-like 3... 0.04 Orthogroups_2024-Update
At5g37900 No alias TRAF-like superfamily protein [Source:TAIR;Acc:AT5G37900] 0.03 Orthogroups_2024-Update
Bradi1g15623 No alias Protein with RING/U-box and TRAF-like domains 0.02 Orthogroups_2024-Update
Bradi2g35472 No alias Protein with RING/U-box and TRAF-like domains 0.04 Orthogroups_2024-Update
Bradi5g07216 No alias Protein with RING/U-box and TRAF-like domains 0.02 Orthogroups_2024-Update
Brara.G02898.1 No alias E3 ubiquitin ligase *(SINA) 0.03 Orthogroups_2024-Update
HORVU1Hr1G012490.5 No alias E3 ubiquitin ligase *(SINA) 0.02 Orthogroups_2024-Update
HORVU3Hr1G004950.1 No alias E3 ubiquitin ligase *(SINA) 0.05 Orthogroups_2024-Update
LOC_Os06g20610 No alias seven in absentia protein family domain containing... 0.02 Orthogroups_2024-Update
Potri.017G122800 No alias Protein with RING/U-box and TRAF-like domains 0.03 Orthogroups_2024-Update
Sobic.003G089500.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Solyc02g069880 No alias E3 ubiquitin-protein ligase (AHRD V3.3 *** M1BWA5_SOLTU) 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
CC GO:0005737 cytoplasm IEA 16Dec
BP GO:0006511 ubiquitin-dependent protein catabolic process IEA 16Dec
BP GO:0007275 multicellular organism development IEA 16Dec
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Type GO Term Name Evidence Source
MF GO:0005092 GDP-dissociation inhibitor activity IEP Predicted GO
BP GO:0007264 small GTPase mediated signal transduction IEP Predicted GO
MF GO:0008107 galactoside 2-alpha-L-fucosyltransferase activity IEP Predicted GO
MF GO:0008200 ion channel inhibitor activity IEP Predicted GO
BP GO:0009719 response to endogenous stimulus IEP Predicted GO
BP GO:0009725 response to hormone IEP Predicted GO
BP GO:0009733 response to auxin IEP Predicted GO
BP GO:0010033 response to organic substance IEP Predicted GO
MF GO:0016247 channel regulator activity IEP Predicted GO
MF GO:0016248 channel inhibitor activity IEP Predicted GO
MF GO:0017080 sodium channel regulator activity IEP Predicted GO
MF GO:0019871 sodium channel inhibitor activity IEP Predicted GO
MF GO:0031127 alpha-(1,2)-fucosyltransferase activity IEP Predicted GO
BP GO:0042221 response to chemical IEP Predicted GO
BP GO:0042546 cell wall biogenesis IEP Predicted GO
MF GO:0098772 molecular function regulator IEP Predicted GO
MF GO:0099106 ion channel regulator activity IEP Predicted GO
InterPro domains Description Start Stop
IPR018121 7-in-absentia-prot_TRAF-dom 89 165
No external refs found!