Brara.E01582.1

Description : nucleoporin of nuclear pore complex *(NUP50)

Gene families : OG_42_0004029 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0004029_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Brassica rapa: Brara.E01582.1
Cluster	HCAA Clusters: Cluster_212

Target	Alias	Description	ECC score	Gene Family Method
A4A49_14920	No alias	nuclear pore complex protein nup50a	0.03	Orthogroups_2024-Update
Bradi1g33117	No alias	NUP50 (Nucleoporin 50 kDa) protein	0.02	Orthogroups_2024-Update
Mp5g18610.1	No alias	NUP50 nucleoporin of nuclear pore complex	0.03	Orthogroups_2024-Update
Potri.003G056400	No alias	NUP50 (Nucleoporin 50 kDa) protein	0.03	Orthogroups_2024-Update
Solyc03g120280	No alias	Ran-binding protein 1 domain-containing (AHRD V3.3 ***...	0.02	Orthogroups_2024-Update
evm.model.tig00021612.44	No alias	no hits & (original description: no original description)	0.02	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005643	nuclear pore	IEA	16Dec
BP	GO:0006810	transport	None	Extended
BP	GO:0008150	biological_process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
CC	GO:0044422	organelle part	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044428	nuclear part	None	Extended
CC	GO:0044446	intracellular organelle part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0046907	intracellular transport	IEA	16Dec
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0051641	cellular localization	None	Extended
BP	GO:0051649	establishment of localization in cell	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0005524	ATP binding	IEP	Predicted GO
MF	GO:0008144	drug binding	IEP	Predicted GO
MF	GO:0008170	N-methyltransferase activity	IEP	Predicted GO
MF	GO:0008276	protein methyltransferase activity	IEP	Predicted GO
MF	GO:0008757	S-adenosylmethionine-dependent methyltransferase activity	IEP	Predicted GO
MF	GO:0016278	lysine N-methyltransferase activity	IEP	Predicted GO
MF	GO:0016279	protein-lysine N-methyltransferase activity	IEP	Predicted GO
MF	GO:0018024	histone-lysine N-methyltransferase activity	IEP	Predicted GO
MF	GO:0030554	adenyl nucleotide binding	IEP	Predicted GO
MF	GO:0032559	adenyl ribonucleotide binding	IEP	Predicted GO
MF	GO:0042054	histone methyltransferase activity	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR000156	Ran_bind_dom	293	405
IPR015007	NUP2/50/61	14	77

External Links

No external refs found!