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  5. Brara.E01679.1

Brara.E01679.1


Description : class VIII myosin microfilament-based motor protein


Gene families : OG_42_0000130 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000130_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.E01679.1
Cluster HCAA Clusters: Cluster_142

Target Alias Description ECC score Gene Family Method Actions
Brara.D00248.1 No alias Unknown function 0.03 Orthogroups_2024-Update
PSME_00001004-RA No alias (at5g20490 : 1741.0) Encodes a member of the type XI... 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003774 motor activity IEA 16Dec
MF GO:0005515 protein binding IEA 16Dec
MF GO:0005524 ATP binding IEA 16Dec
CC GO:0016459 myosin complex IEA 16Dec
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Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP Predicted GO
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Predicted GO
BP GO:0000398 mRNA splicing, via spliceosome IEP Predicted GO
BP GO:0008380 RNA splicing IEP Predicted GO
MF GO:0016491 oxidoreductase activity IEP Predicted GO
InterPro domains Description Start Stop
IPR000048 IQ_motif_EF-hand-BS 848 866
IPR000048 IQ_motif_EF-hand-BS 897 913
IPR000048 IQ_motif_EF-hand-BS 827 844
IPR001609 Myosin_head_motor_dom 158 809
No external refs found!