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  5. Brara.E01682.1

Brara.E01682.1


Description : EC_6.1 ligase forming carbon-oxygen bond & alanine-tRNA ligase


Gene families : OG_42_0001631 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001631_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.E01682.1
Cluster HCAA Clusters: Cluster_198


Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEA 16Dec
MF GO:0003676 nucleic acid binding IEA 16Dec
MF GO:0004812 aminoacyl-tRNA ligase activity IEA 16Dec
MF GO:0004813 alanine-tRNA ligase activity IEA 16Dec
MF GO:0005524 ATP binding IEA 16Dec
BP GO:0006419 alanyl-tRNA aminoacylation IEA 16Dec
BP GO:0043039 tRNA aminoacylation IEA 16Dec
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Type GO Term Name Evidence Source
BP GO:0006720 isoprenoid metabolic process IEP Predicted GO
BP GO:0006721 terpenoid metabolic process IEP Predicted GO
BP GO:0008299 isoprenoid biosynthetic process IEP Predicted GO
MF GO:0008661 1-deoxy-D-xylulose-5-phosphate synthase activity IEP Predicted GO
BP GO:0016114 terpenoid biosynthetic process IEP Predicted GO
BP GO:0016192 vesicle-mediated transport IEP Predicted GO
BP GO:0016197 endosomal transport IEP Predicted GO
BP GO:0016482 cytosolic transport IEP Predicted GO
MF GO:0016744 transferase activity, transferring aldehyde or ketonic groups IEP Predicted GO
CC GO:0030906 retromer, cargo-selective complex IEP Predicted GO
BP GO:0042147 retrograde transport, endosome to Golgi IEP Predicted GO
InterPro domains Description Start Stop
IPR018164 Ala-tRNA-synth_IIc_N 18 410
IPR012947 tRNA_SAD 508 566
IPR003156 DHHA1_dom 628 768
No external refs found!