Brara.E01777.1

Description : RNA helicase *(Prp2)

Gene families : OG_42_0000210 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000210_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Brassica rapa: Brara.E01777.1
Cluster	HCAA Clusters: Cluster_32

Target	Alias	Description	ECC score	Gene Family Method
At3g62310	No alias	Probable pre-mRNA-splicing factor ATP-dependent RNA...	0.03	Orthogroups_2024-Update
Bradi3g13460	No alias	ATP-dependent RNA helicase, putative	0.02	Orthogroups_2024-Update
Bradi4g16730	No alias	RNA helicase family protein	0.03	Orthogroups_2024-Update
Brara.H01307.1	No alias	Unknown function	0.03	Orthogroups_2024-Update
Cre03.g182950	No alias	RNA helicase family protein	0.02	Orthogroups_2024-Update
Cre07.g329150	No alias	RNA helicase family protein	0.02	Orthogroups_2024-Update
Cre07.g349100	No alias	RNA helicase family protein	0.02	Orthogroups_2024-Update
Cre07.g352251	No alias	RNA helicase family protein	0.02	Orthogroups_2024-Update
GRMZM2G300375	No alias	RNA helicase family protein	0.02	Orthogroups_2024-Update
Kfl00133_0140	kfl00133_0140_v1.1	(at3g62310 : 1153.0) RNA helicase family protein;...	0.03	Orthogroups_2024-Update
Kfl00316_0150	kfl00316_0150_v1.1	(at5g13010 : 1240.0) embryo defective 3011 (EMB3011);...	0.02	Orthogroups_2024-Update
Kfl00433_0080	kfl00433_0080_v1.1	(at1g33390 : 423.0) Over-expression of this gene results...	0.01	Orthogroups_2024-Update
Mp1g21130.1	No alias	helicase Prp43 of Intron-Lariat Spliceosome complex	0.02	Orthogroups_2024-Update
Sopen05g010270	No alias	Oligonucleotide/oligosaccharide-binding (OB)-fold	0.02	Orthogroups_2024-Update
evm.model.contig_2036.4	No alias	(at5g13010 : 784.0) embryo defective 3011 (EMB3011);...	0.01	Orthogroups_2024-Update
evm.model.contig_618.2	No alias	(at3g26560 : 1023.0) ATP-dependent RNA helicase,...	0.02	Orthogroups_2024-Update
evm.model.tig00000113.111	No alias	(at1g33390 : 274.0) Over-expression of this gene results...	0.01	Orthogroups_2024-Update
evm.model.tig00000984.27	No alias	(at1g32490 : 711.0) Encodes a homolog of the yeast PRP2...	0.02	Orthogroups_2024-Update
evm.model.tig00021589.29	No alias	(at3g26560 : 868.0) ATP-dependent RNA helicase,...	0.02	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004386	helicase activity	IEA	16Dec
MF	GO:0016462	pyrophosphatase activity	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	None	Extended
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	None	Extended
MF	GO:0017111	nucleoside-triphosphatase activity	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	IEP	Predicted GO
MF	GO:0001882	nucleoside binding	IEP	Predicted GO
MF	GO:0001883	purine nucleoside binding	IEP	Predicted GO
MF	GO:0003676	nucleic acid binding	IEP	Predicted GO
MF	GO:0003723	RNA binding	IEP	Predicted GO
MF	GO:0003876	AMP deaminase activity	IEP	Predicted GO
MF	GO:0003924	GTPase activity	IEP	Predicted GO
MF	GO:0004133	glycogen debranching enzyme activity	IEP	Predicted GO
MF	GO:0004134	4-alpha-glucanotransferase activity	IEP	Predicted GO
MF	GO:0004659	prenyltransferase activity	IEP	Predicted GO
MF	GO:0004674	protein serine/threonine kinase activity	IEP	Predicted GO
MF	GO:0005049	nuclear export signal receptor activity	IEP	Predicted GO
MF	GO:0005488	binding	IEP	Predicted GO
MF	GO:0005524	ATP binding	IEP	Predicted GO
MF	GO:0005525	GTP binding	IEP	Predicted GO
BP	GO:0006188	IMP biosynthetic process	IEP	Predicted GO
BP	GO:0006886	intracellular protein transport	IEP	Predicted GO
BP	GO:0006888	ER to Golgi vesicle-mediated transport	IEP	Predicted GO
MF	GO:0008097	5S rRNA binding	IEP	Predicted GO
BP	GO:0008104	protein localization	IEP	Predicted GO
MF	GO:0008144	drug binding	IEP	Predicted GO
MF	GO:0008173	RNA methyltransferase activity	IEP	Predicted GO
MF	GO:0008318	protein prenyltransferase activity	IEP	Predicted GO
BP	GO:0015031	protein transport	IEP	Predicted GO
BP	GO:0015833	peptide transport	IEP	Predicted GO
BP	GO:0016192	vesicle-mediated transport	IEP	Predicted GO
CC	GO:0016459	myosin complex	IEP	Predicted GO
MF	GO:0016740	transferase activity	IEP	Predicted GO
MF	GO:0016747	transferase activity, transferring acyl groups other than amino-acyl groups	IEP	Predicted GO
MF	GO:0016757	transferase activity, transferring glycosyl groups	IEP	Predicted GO
MF	GO:0016810	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds	IEP	Predicted GO
MF	GO:0016814	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines	IEP	Predicted GO
MF	GO:0017056	structural constituent of nuclear pore	IEP	Predicted GO
MF	GO:0017076	purine nucleotide binding	IEP	Predicted GO
BP	GO:0018342	protein prenylation	IEP	Predicted GO
MF	GO:0019001	guanyl nucleotide binding	IEP	Predicted GO
MF	GO:0019239	deaminase activity	IEP	Predicted GO
CC	GO:0030117	membrane coat	IEP	Predicted GO
CC	GO:0030120	vesicle coat	IEP	Predicted GO
CC	GO:0030126	COPI vesicle coat	IEP	Predicted GO
CC	GO:0030127	COPII vesicle coat	IEP	Predicted GO
MF	GO:0030554	adenyl nucleotide binding	IEP	Predicted GO
MF	GO:0031267	small GTPase binding	IEP	Predicted GO
BP	GO:0032261	purine nucleotide salvage	IEP	Predicted GO
BP	GO:0032264	IMP salvage	IEP	Predicted GO
MF	GO:0032549	ribonucleoside binding	IEP	Predicted GO
MF	GO:0032550	purine ribonucleoside binding	IEP	Predicted GO
MF	GO:0032553	ribonucleotide binding	IEP	Predicted GO
MF	GO:0032555	purine ribonucleotide binding	IEP	Predicted GO
MF	GO:0032559	adenyl ribonucleotide binding	IEP	Predicted GO
MF	GO:0032561	guanyl ribonucleotide binding	IEP	Predicted GO
BP	GO:0033036	macromolecule localization	IEP	Predicted GO
MF	GO:0035639	purine ribonucleoside triphosphate binding	IEP	Predicted GO
MF	GO:0036094	small molecule binding	IEP	Predicted GO
BP	GO:0042886	amide transport	IEP	Predicted GO
BP	GO:0043094	cellular metabolic compound salvage	IEP	Predicted GO
BP	GO:0043101	purine-containing compound salvage	IEP	Predicted GO
MF	GO:0043167	ion binding	IEP	Predicted GO
MF	GO:0043168	anion binding	IEP	Predicted GO
BP	GO:0043173	nucleotide salvage	IEP	Predicted GO
CC	GO:0044433	cytoplasmic vesicle part	IEP	Predicted GO
BP	GO:0045184	establishment of protein localization	IEP	Predicted GO
BP	GO:0046040	IMP metabolic process	IEP	Predicted GO
BP	GO:0046907	intracellular transport	IEP	Predicted GO
MF	GO:0047623	adenosine-phosphate deaminase activity	IEP	Predicted GO
BP	GO:0051641	cellular localization	IEP	Predicted GO
BP	GO:0051649	establishment of localization in cell	IEP	Predicted GO
BP	GO:0071702	organic substance transport	IEP	Predicted GO
BP	GO:0071705	nitrogen compound transport	IEP	Predicted GO
MF	GO:0097159	organic cyclic compound binding	IEP	Predicted GO
BP	GO:0097354	prenylation	IEP	Predicted GO
MF	GO:0097367	carbohydrate derivative binding	IEP	Predicted GO
MF	GO:0140104	molecular carrier activity	IEP	Predicted GO
MF	GO:0140142	nucleocytoplasmic carrier activity	IEP	Predicted GO
MF	GO:1901265	nucleoside phosphate binding	IEP	Predicted GO
MF	GO:1901363	heterocyclic compound binding	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR011709	DUF1605	946	1023
IPR007502	Helicase-assoc_dom	798	872
IPR001650	Helicase_C	609	735

External Links

No external refs found!

Brara.E01777.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation