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  5. Brara.E01987.1

Brara.E01987.1


Description : arabinogalactan protein *(Xylogen)


Gene families : OG_42_0000300 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000300_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.E01987.1
Cluster HCAA Clusters: Cluster_322

Target Alias Description ECC score Gene Family Method Actions
A4A49_24318 No alias non-specific lipid-transfer protein-like protein 0.03 Orthogroups_2024-Update
A4A49_34683 No alias non-specific lipid-transfer protein-like protein 0.03 Orthogroups_2024-Update
MA_494876g0010 No alias (at3g22600 : 82.0) Bifunctional inhibitor/lipid-transfer... 0.03 Orthogroups_2024-Update
MA_5581g0010 No alias (at3g22600 : 87.0) Bifunctional inhibitor/lipid-transfer... 0.03 Orthogroups_2024-Update
MA_64802g0020 No alias no hits & (original description: no original description) 0.03 Orthogroups_2024-Update
PSME_00006837-RA No alias no hits & (original description: no original description) 0.04 Orthogroups_2024-Update
PSME_00013382-RA No alias (at4g14815 : 89.0) Bifunctional inhibitor/lipid-transfer... 0.02 Orthogroups_2024-Update
PSME_00020969-RA No alias (at3g22600 : 105.0) Bifunctional... 0.03 Orthogroups_2024-Update
PSME_00032772-RA No alias no hits & (original description: no original description) 0.02 Orthogroups_2024-Update
PSME_00039935-RA No alias no hits & (original description: no original description) 0.03 Orthogroups_2024-Update
Potri.004G196000 No alias Bifunctional inhibitor/lipid-transfer protein/seed... 0.03 Orthogroups_2024-Update
Potri.005G211900 No alias Bifunctional inhibitor/lipid-transfer protein/seed... 0.03 Orthogroups_2024-Update
Pp1s139_88V6 No alias Non-specific lipid-transfer protein 0.02 Orthogroups_2024-Update
Pp1s61_309V6 No alias nonspecific lipid-transfer protein 0.02 Orthogroups_2024-Update
Sobic.001G059700.1 No alias arabinogalactan protein *(Xylogen) 0.03 Orthogroups_2024-Update
Sobic.001G473200.1 No alias arabinogalactan protein *(Xylogen) 0.02 Orthogroups_2024-Update
Sobic.009G178500.1 No alias arabinogalactan protein *(Xylogen) 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003774 motor activity IEP Predicted GO
MF GO:0003855 3-dehydroquinate dehydratase activity IEP Predicted GO
MF GO:0003993 acid phosphatase activity IEP Predicted GO
MF GO:0004470 malic enzyme activity IEP Predicted GO
MF GO:0004471 malate dehydrogenase (decarboxylating) (NAD+) activity IEP Predicted GO
MF GO:0004559 alpha-mannosidase activity IEP Predicted GO
MF GO:0004764 shikimate 3-dehydrogenase (NADP+) activity IEP Predicted GO
BP GO:0006013 mannose metabolic process IEP Predicted GO
MF GO:0008289 lipid binding IEP Predicted GO
MF GO:0015923 mannosidase activity IEP Predicted GO
MF GO:0016614 oxidoreductase activity, acting on CH-OH group of donors IEP Predicted GO
MF GO:0016615 malate dehydrogenase activity IEP Predicted GO
MF GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor IEP Predicted GO
BP GO:0019318 hexose metabolic process IEP Predicted GO
MF GO:0032182 ubiquitin-like protein binding IEP Predicted GO
MF GO:0043130 ubiquitin binding IEP Predicted GO
InterPro domains Description Start Stop
IPR016140 Bifunc_inhib/LTP/seed_store 8 105
No external refs found!