1. Home
  2. Species
  3. Brassica rapa
  4. Sequence
  5. Brara.E02013.1

Brara.E02013.1


Description : transcriptional regulator of red/far-red light perception & FRS/FRF-type transcription factor


Gene families : OG_42_0000075 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000075_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.E02013.1
Cluster HCAA Clusters: Cluster_146

Target Alias Description ECC score Gene Family Method Actions
A4A49_48160 No alias protein far1-related sequence 6 0.04 Orthogroups_2024-Update
At4g19990 No alias FAR1-related sequence 1 [Source:UniProtKB/TrEMBL;Acc:F4JU19] 0.07 Orthogroups_2024-Update
Glyma.04G124300 No alias far-red elongated hypocotyls 3 0.03 Orthogroups_2024-Update
Glyma.10G121700 No alias FAR1-related sequence 5 0.05 Orthogroups_2024-Update
Glyma.15G125500 No alias FAR1-related sequence 8 0.03 Orthogroups_2024-Update
HORVU6Hr1G055990.3 No alias FRS/FRF-type transcription factor 0.04 Orthogroups_2024-Update
HORVU7Hr1G030190.1 No alias FRS/FRF-type transcription factor 0.04 Orthogroups_2024-Update
LOC_Os11g14020 No alias transposon protein, putative, unclassified, expressed 0.02 Orthogroups_2024-Update
Potri.016G018100 No alias FAR1-related sequence 2 0.03 Orthogroups_2024-Update
Pp1s168_52V6 No alias No description available 0.03 Orthogroups_2024-Update
Pp1s222_126V6 No alias No description available 0.03 Orthogroups_2024-Update
Seita.1G186800.1 No alias FRS/FRF-type transcription factor 0.03 Orthogroups_2024-Update
Sopen02g017690 No alias FAR1 DNA-binding domain 0.04 Orthogroups_2024-Update
Sopen03g036420 No alias FAR1 DNA-binding domain 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP Predicted GO
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP Predicted GO
CC GO:0005576 extracellular region IEP Predicted GO
CC GO:0005618 cell wall IEP Predicted GO
MF GO:0008883 glutamyl-tRNA reductase activity IEP Predicted GO
MF GO:0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor IEP Predicted GO
MF GO:0016762 xyloglucan:xyloglucosyl transferase activity IEP Predicted GO
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP Predicted GO
MF GO:0016859 cis-trans isomerase activity IEP Predicted GO
MF GO:0016903 oxidoreductase activity, acting on the aldehyde or oxo group of donors IEP Predicted GO
CC GO:0030312 external encapsulating structure IEP Predicted GO
BP GO:0033013 tetrapyrrole metabolic process IEP Predicted GO
BP GO:0033014 tetrapyrrole biosynthetic process IEP Predicted GO
CC GO:0048046 apoplast IEP Predicted GO
MF GO:0050661 NADP binding IEP Predicted GO
InterPro domains Description Start Stop
IPR004330 FAR1_DNA_bnd_dom 82 186
IPR018289 MULE_transposase_dom 284 376
No external refs found!