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  5. Brara.E02089.1

Brara.E02089.1


Description : p-coumarate


Gene families : OG_42_0000133 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000133_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.E02089.1
Cluster HCAA Clusters: Cluster_166

Target Alias Description ECC score Gene Family Method Actions
A4A49_18573 No alias 4-coumarate--coa ligase-like 9 0.04 Orthogroups_2024-Update
A4A49_40482 No alias 4-coumarate--coa ligase 1 0.03 Orthogroups_2024-Update
At3g21230 No alias 4-coumarate--CoA ligase 4... 0.04 Orthogroups_2024-Update
At3g21240 No alias Cinnamyl alcohol dehydrogenase... 0.03 Orthogroups_2024-Update
LOC_Os01g67540 No alias AMP-binding domain containing protein, expressed 0.02 Orthogroups_2024-Update
LOC_Os03g05780 No alias 4-coumarate--CoA ligase-like 7, putative, expressed 0.03 Orthogroups_2024-Update
MA_10432069g0020 No alias (at1g20510 : 391.0) OPC-8:0 CoA ligase1 (OPCL1);... 0.02 Orthogroups_2024-Update
MA_633407g0010 No alias (o24145|4cl1_tobac : 656.0) 4-coumarate--CoA ligase 1... 0.02 Orthogroups_2024-Update
MA_8946476g0010 No alias (at1g62940 : 648.0) encodes an acyl-CoA synthetase, has... 0.02 Orthogroups_2024-Update
PSME_00010613-RA No alias (at1g20510 : 572.0) OPC-8:0 CoA ligase1 (OPCL1);... 0.03 Orthogroups_2024-Update
Potri.T071600 No alias 4-coumarate:CoA ligase 5 0.03 Orthogroups_2024-Update
Pp1s167_96V6 No alias 4-coumarate:coenzyme a ligase 4 0.02 Orthogroups_2024-Update
Pp1s71_170V6 No alias 4-coumarate: ligase 0.02 Orthogroups_2024-Update
Sobic.007G145600.1 No alias p-coumarate 0.03 Orthogroups_2024-Update
Solyc03g097030 No alias 4-coumarate--CoA ligase 0.04 Orthogroups_2024-Update
Solyc03g111170 No alias 4-coumarate:CoA ligase-like protein (AHRD V3.3 *** G7J515_MEDTR) 0.03 Orthogroups_2024-Update
Solyc06g068650 No alias 4-coumarate--CoA ligase 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000096 sulfur amino acid metabolic process IEP Predicted GO
BP GO:0000097 sulfur amino acid biosynthetic process IEP Predicted GO
BP GO:0000375 RNA splicing, via transesterification reactions IEP Predicted GO
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Predicted GO
BP GO:0000398 mRNA splicing, via spliceosome IEP Predicted GO
MF GO:0004489 methylenetetrahydrofolate reductase (NAD(P)H) activity IEP Predicted GO
MF GO:0004499 N,N-dimethylaniline monooxygenase activity IEP Predicted GO
CC GO:0005741 mitochondrial outer membrane IEP Predicted GO
BP GO:0006520 cellular amino acid metabolic process IEP Predicted GO
BP GO:0006534 cysteine metabolic process IEP Predicted GO
BP GO:0006535 cysteine biosynthetic process from serine IEP Predicted GO
BP GO:0006555 methionine metabolic process IEP Predicted GO
BP GO:0006563 L-serine metabolic process IEP Predicted GO
BP GO:0006790 sulfur compound metabolic process IEP Predicted GO
MF GO:0008374 O-acyltransferase activity IEP Predicted GO
BP GO:0008380 RNA splicing IEP Predicted GO
MF GO:0009001 serine O-acetyltransferase activity IEP Predicted GO
BP GO:0009066 aspartate family amino acid metabolic process IEP Predicted GO
BP GO:0009069 serine family amino acid metabolic process IEP Predicted GO
BP GO:0009070 serine family amino acid biosynthetic process IEP Predicted GO
MF GO:0010309 acireductone dioxygenase [iron(II)-requiring] activity IEP Predicted GO
BP GO:0015985 energy coupled proton transport, down electrochemical gradient IEP Predicted GO
BP GO:0015986 ATP synthesis coupled proton transport IEP Predicted GO
MF GO:0016407 acetyltransferase activity IEP Predicted GO
MF GO:0016412 serine O-acyltransferase activity IEP Predicted GO
MF GO:0016413 O-acetyltransferase activity IEP Predicted GO
MF GO:0016645 oxidoreductase activity, acting on the CH-NH group of donors IEP Predicted GO
MF GO:0016646 oxidoreductase activity, acting on the CH-NH group of donors, NAD or NADP as acceptor IEP Predicted GO
MF GO:0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen IEP Predicted GO
MF GO:0016709 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen IEP Predicted GO
BP GO:0019344 cysteine biosynthetic process IEP Predicted GO
CC GO:0019867 outer membrane IEP Predicted GO
CC GO:0030532 small nuclear ribonucleoprotein complex IEP Predicted GO
CC GO:0031966 mitochondrial membrane IEP Predicted GO
CC GO:0031968 organelle outer membrane IEP Predicted GO
BP GO:0044272 sulfur compound biosynthetic process IEP Predicted GO
BP GO:0044281 small molecule metabolic process IEP Predicted GO
CC GO:0046540 U4/U6 x U5 tri-snRNP complex IEP Predicted GO
MF GO:0046933 proton-transporting ATP synthase activity, rotational mechanism IEP Predicted GO
MF GO:0051213 dioxygenase activity IEP Predicted GO
CC GO:0097525 spliceosomal snRNP complex IEP Predicted GO
CC GO:0097526 spliceosomal tri-snRNP complex IEP Predicted GO
CC GO:0098588 bounding membrane of organelle IEP Predicted GO
CC GO:0098805 whole membrane IEP Predicted GO
CC GO:0120114 Sm-like protein family complex IEP Predicted GO
BP GO:1901605 alpha-amino acid metabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR025110 AMP-bd_C 462 537
IPR000873 AMP-dep_Synth/Lig 42 453
No external refs found!