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  5. Brara.E02164.1

Brara.E02164.1


Description : ribonuclease *(RTL2)


Gene families : OG_42_0000292 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000292_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.E02164.1
Cluster HCAA Clusters: Cluster_231

Target Alias Description ECC score Gene Family Method Actions
Bradi1g47117 No alias RNAse THREE-like protein 2 0.02 Orthogroups_2024-Update
LOC_Os04g43050 No alias Dicer, putative, expressed 0.03 Orthogroups_2024-Update
Potri.006G188800 No alias dicer-like 4 0.03 Orthogroups_2024-Update
Solyc07g005030 No alias Dicer-like 4 0.03 Orthogroups_2024-Update
Solyc11g008530 No alias Dicer-like 2d 0.03 Orthogroups_2024-Update
Sopen07g025140 No alias Ribonuclease III domain 0.03 Orthogroups_2024-Update
Sopen11g004310 No alias Ribonuclease III domain 0.02 Orthogroups_2024-Update
Sopen11g004330 No alias Ribonuclease III domain 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0004525 ribonuclease III activity IEA 16Dec
BP GO:0006396 RNA processing IEA 16Dec
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Type GO Term Name Evidence Source
CC GO:0000813 ESCRT I complex IEP Predicted GO
MF GO:0004556 alpha-amylase activity IEP Predicted GO
MF GO:0004842 ubiquitin-protein transferase activity IEP Predicted GO
MF GO:0005319 lipid transporter activity IEP Predicted GO
BP GO:0006869 lipid transport IEP Predicted GO
MF GO:0016160 amylase activity IEP Predicted GO
BP GO:0016192 vesicle-mediated transport IEP Predicted GO
BP GO:0016197 endosomal transport IEP Predicted GO
CC GO:0016459 myosin complex IEP Predicted GO
BP GO:0016567 protein ubiquitination IEP Predicted GO
MF GO:0019787 ubiquitin-like protein transferase activity IEP Predicted GO
BP GO:0032446 protein modification by small protein conjugation IEP Predicted GO
BP GO:0032509 endosome transport via multivesicular body sorting pathway IEP Predicted GO
CC GO:0036452 ESCRT complex IEP Predicted GO
MF GO:0042393 histone binding IEP Predicted GO
MF GO:0043531 ADP binding IEP Predicted GO
CC GO:0044440 endosomal part IEP Predicted GO
BP GO:0061024 membrane organization IEP Predicted GO
BP GO:0070647 protein modification by small protein conjugation or removal IEP Predicted GO
BP GO:0071985 multivesicular body sorting pathway IEP Predicted GO
BP GO:0120009 intermembrane lipid transfer IEP Predicted GO
MF GO:0120013 intermembrane lipid transfer activity IEP Predicted GO
InterPro domains Description Start Stop
IPR014720 dsRBD_dom 215 272
IPR000999 RNase_III_dom 77 184
No external refs found!