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  5. Brara.E02241.1

Brara.E02241.1


Description : MADS/AGL-type transcription factor


Gene families : OG_42_0000009 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.E02241.1
Cluster HCAA Clusters: Cluster_400

Target Alias Description ECC score Gene Family Method Actions
A4A49_14235 No alias developmental protein sepallata 1 0.03 Orthogroups_2024-Update
A4A49_16645 No alias agamous-like mads-box protein agl11 0.03 Orthogroups_2024-Update
A4A49_18989 No alias agamous-like mads-box protein agl19 0.04 Orthogroups_2024-Update
A4A49_19521 No alias developmental protein sepallata 1 0.04 Orthogroups_2024-Update
A4A49_22632 No alias floral homeotic protein agamous 0.03 Orthogroups_2024-Update
At1g22130 No alias Agamous-like MADS-box protein AGL104... 0.03 Orthogroups_2024-Update
At1g24260 No alias At1g24260 [Source:UniProtKB/TrEMBL;Acc:B4F7R9] 0.05 Orthogroups_2024-Update
At1g69120 No alias AP1 [Source:UniProtKB/TrEMBL;Acc:A0A178W846] 0.04 Orthogroups_2024-Update
At2g45650 No alias AGAMOUS-like protein 6 [Source:UniProtKB/TrEMBL;Acc:Q1PEU3] 0.04 Orthogroups_2024-Update
At5g60910 No alias Agamous-like MADS-box protein AGL8... 0.03 Orthogroups_2024-Update
Bradi2g38695 No alias MADS-box transcription factor family protein 0.02 Orthogroups_2024-Update
Brara.B01837.1 No alias regulatory protein *(AP1/CAL/FUL) of floral meristem... 0.03 Orthogroups_2024-Update
Brara.C00582.1 No alias MADS/AGL-type transcription factor 0.04 Orthogroups_2024-Update
Brara.C01461.1 No alias MADS/AGL-type transcription factor 0.03 Orthogroups_2024-Update
Brara.D01509.1 No alias MADS/AGL-type transcription factor 0.04 Orthogroups_2024-Update
Brara.G00861.1 No alias regulatory protein *(SEPALLATA) of floral meristem... 0.02 Orthogroups_2024-Update
Brara.J01932.1 No alias regulatory protein *(SEPALLATA) of floral meristem... 0.03 Orthogroups_2024-Update
Brara.K00198.1 No alias MADS/AGL-type transcription factor 0.03 Orthogroups_2024-Update
GRMZM2G171365 No alias AGAMOUS-like 20 0.03 Orthogroups_2024-Update
Glyma.05G163200 No alias K-box region and MADS-box transcription factor family protein 0.01 Orthogroups_2024-Update
Glyma.09G283800 No alias K-box region and MADS-box transcription factor family protein 0.04 Orthogroups_2024-Update
Glyma.13G052100 No alias AGAMOUS-like 8 0.03 Orthogroups_2024-Update
Glyma.18G273600 No alias AGAMOUS-like 8 0.02 Orthogroups_2024-Update
Glyma.20G136700 No alias AGAMOUS-like 62 0.03 Orthogroups_2024-Update
HORVU1Hr1G047560.2 No alias regulatory protein *(AP1/CAL/FUL) of floral meristem... 0.02 Orthogroups_2024-Update
HORVU1Hr1G063620.2 No alias component *(PISTILLATA) of AP3-PISTILLATA organ-identity... 0.02 Orthogroups_2024-Update
HORVU3Hr1G026650.1 No alias MADS/AGL-type transcription factor 0.02 Orthogroups_2024-Update
LOC_Os01g69850 No alias OsMADS65 - MADS-box family gene with MIKC* type-box, expressed 0.02 Orthogroups_2024-Update
LOC_Os02g06860 No alias OsMADS80 - MADS-box family gene with M-alpha type-box, expressed 0.02 Orthogroups_2024-Update
LOC_Os03g54160 No alias OsMADS14 - MADS-box family gene with MIKCc type-box, expressed 0.02 Orthogroups_2024-Update
LOC_Os04g49150 No alias OsMADS17 - MADS-box family gene with MIKCc type-box, expressed 0.03 Orthogroups_2024-Update
LOC_Os08g41950 No alias OsMADS7 - MADS-box family gene with MIKCc type-box, expressed 0.02 Orthogroups_2024-Update
LOC_Os10g39130 No alias OsMADS56 - MADS-box family gene with MIKCc type-box, expressed 0.04 Orthogroups_2024-Update
Mp4g12490.1 No alias transcription factor (MADS/AGL) 0.03 Orthogroups_2024-Update
Potri.001G058400 No alias K-box region and MADS-box transcription factor family protein 0.03 Orthogroups_2024-Update
Potri.001G284301 No alias AGAMOUS-like 21 0.03 Orthogroups_2024-Update
Potri.003G119700 No alias AGAMOUS-like 19 0.03 Orthogroups_2024-Update
Potri.004G064300 No alias K-box region and MADS-box transcription factor family protein 0.03 Orthogroups_2024-Update
Potri.005G182200 No alias K-box region and MADS-box transcription factor family protein 0.04 Orthogroups_2024-Update
Potri.013G104900 No alias K-box region and MADS-box transcription factor family protein 0.03 Orthogroups_2024-Update
Seita.3G280400.1 No alias MADS/AGL-type transcription factor 0.02 Orthogroups_2024-Update
Seita.6G194800.1 No alias MADS/AGL-type transcription factor 0.02 Orthogroups_2024-Update
Seita.6G223400.1 No alias regulatory protein *(SEPALLATA) of floral meristem... 0.03 Orthogroups_2024-Update
Seita.9G561000.1 No alias MADS/AGL-type transcription factor 0.02 Orthogroups_2024-Update
Sobic.009G142500.1 No alias component *(PISTILLATA) of AP3-PISTILLATA organ-identity... 0.03 Orthogroups_2024-Update
Solyc01g060300 No alias damaged DNA binding 2 (AHRD V3.3 --* AT5G58760.2) 0.02 Orthogroups_2024-Update
Sopen08g021160 No alias SRF-type transcription factor (DNA-binding and... 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA 16Dec
MF GO:0046983 protein dimerization activity IEA 16Dec
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Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEP Predicted GO
MF GO:0004664 prephenate dehydratase activity IEP Predicted GO
BP GO:0006355 regulation of transcription, DNA-templated IEP Predicted GO
BP GO:0006508 proteolysis IEP Predicted GO
BP GO:0006558 L-phenylalanine metabolic process IEP Predicted GO
BP GO:0009094 L-phenylalanine biosynthetic process IEP Predicted GO
BP GO:0009095 aromatic amino acid family biosynthetic process, prephenate pathway IEP Predicted GO
BP GO:0009889 regulation of biosynthetic process IEP Predicted GO
BP GO:0010468 regulation of gene expression IEP Predicted GO
BP GO:0010556 regulation of macromolecule biosynthetic process IEP Predicted GO
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP Predicted GO
BP GO:0019222 regulation of metabolic process IEP Predicted GO
BP GO:0031323 regulation of cellular metabolic process IEP Predicted GO
BP GO:0031326 regulation of cellular biosynthetic process IEP Predicted GO
MF GO:0043565 sequence-specific DNA binding IEP Predicted GO
MF GO:0050664 oxidoreductase activity, acting on NAD(P)H, oxygen as acceptor IEP Predicted GO
BP GO:0051171 regulation of nitrogen compound metabolic process IEP Predicted GO
BP GO:0051252 regulation of RNA metabolic process IEP Predicted GO
BP GO:0060255 regulation of macromolecule metabolic process IEP Predicted GO
BP GO:0080090 regulation of primary metabolic process IEP Predicted GO
MF GO:0140110 transcription regulator activity IEP Predicted GO
BP GO:1902221 erythrose 4-phosphate/phosphoenolpyruvate family amino acid metabolic process IEP Predicted GO
BP GO:1902223 erythrose 4-phosphate/phosphoenolpyruvate family amino acid biosynthetic process IEP Predicted GO
BP GO:1903506 regulation of nucleic acid-templated transcription IEP Predicted GO
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP Predicted GO
BP GO:2001141 regulation of RNA biosynthetic process IEP Predicted GO
InterPro domains Description Start Stop
IPR002100 TF_MADSbox 15 62
No external refs found!