Brara.E02252.1

Description : PHD-type transcription factor

Gene families : OG_42_0002398 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002398_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Brassica rapa: Brara.E02252.1
Cluster	HCAA Clusters: Cluster_303

Target	Alias	Description	ECC score	Gene Family Method	Actions
Glyma.13G100500	No alias	pathogenesis related homeodomain protein A	0.04	Orthogroups_2024-Update
Glyma.17G059400	No alias	pathogenesis related homeodomain protein A	0.03	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	16Dec
MF	GO:0005488	binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
CC	GO:0000145	exocyst	IEP	Predicted GO
CC	GO:0005681	spliceosomal complex	IEP	Predicted GO
BP	GO:0006887	exocytosis	IEP	Predicted GO
BP	GO:0008380	RNA splicing	IEP	Predicted GO
BP	GO:0032940	secretion by cell	IEP	Predicted GO
CC	GO:0044448	cell cortex part	IEP	Predicted GO
BP	GO:0046903	secretion	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR019787	Znf_PHD-finger	247	302
IPR001356	Homeobox_dom	584	628

External Links

No external refs found!