1. Home
  2. Species
  3. Brassica rapa
  4. Sequence
  5. Brara.E02421.1

Brara.E02421.1


Description : Unknown function


Gene families : OG_42_0002336 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002336_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.E02421.1
Cluster HCAA Clusters: Cluster_109

Target Alias Description ECC score Gene Family Method Actions
137729 No alias photosystem II reaction center protein B 0.03 Orthogroups_2024-Update
Bradi1g05740 No alias photosystem II reaction center protein B 0.03 Orthogroups_2024-Update
Bradi5g09702 No alias photosystem II reaction center protein B 0.03 Orthogroups_2024-Update
GRMZM2G557236 No alias photosystem II reaction center protein B 0.01 Orthogroups_2024-Update
GRMZM5G808939 No alias photosystem II reaction center protein B 0.03 Orthogroups_2024-Update
LOC_Os10g21310 No alias photosystem II P680 chlorophyll A apoprotein, putative, expressed 0.02 Orthogroups_2024-Update
PSME_00000999-RA No alias (p41624|psbb_pinth : 441.0) Photosystem II P680... 0.06 Orthogroups_2024-Update
PSME_00001743-RA No alias (p41624|psbb_pinth : 223.0) Photosystem II P680... 0.06 Orthogroups_2024-Update
PSME_00047959-RA No alias (p41624|psbb_pinth : 521.0) Photosystem II P680... 0.07 Orthogroups_2024-Update
Potri.011G113900 No alias photosystem II reaction center protein B 0.01 Orthogroups_2024-Update
Pp1s27_263V6 No alias photosystem ii 47 kda protein 0.02 Orthogroups_2024-Update
Seita.J014000.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Sobic.003G169100.1 No alias component *(PsbB/CP47) of PS-II reaction center complex 0.02 Orthogroups_2024-Update
Sobic.003G172200.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Solyc01g007500 No alias No description available 0.02 Orthogroups_2024-Update
Sopen01g027130 No alias Photosystem II protein 0.05 Orthogroups_2024-Update
Sopen05g017070 No alias Photosystem II protein 0.04 Orthogroups_2024-Update
evm.model.contig_2297.1 No alias (p09447|psbb_secce : 447.0) Photosystem II P680... 0.06 Orthogroups_2024-Update

Type GO Term Name Evidence Source
CC GO:0009521 photosystem IEA 16Dec
BP GO:0009767 photosynthetic electron transport chain IEA 16Dec
CC GO:0016020 membrane IEA 16Dec
MF GO:0016168 chlorophyll binding IEA 16Dec
BP GO:0019684 photosynthesis, light reaction IEA 16Dec
Toggle parental
Type GO Term Name Evidence Source
MF GO:0009055 electron transfer activity IEP Predicted GO
CC GO:0009579 thylakoid IEP Predicted GO
BP GO:0009772 photosynthetic electron transport in photosystem II IEP Predicted GO
BP GO:0015979 photosynthesis IEP Predicted GO
MF GO:0045156 electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity IEP Predicted GO
InterPro domains Description Start Stop
IPR000932 PS_antenna-like 25 126
No external refs found!