1. Home
  2. Species
  3. Brassica rapa
  4. Sequence
  5. Brara.E02500.1

Brara.E02500.1


Description : clade C phosphatase


Gene families : OG_42_0005796 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0005796_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.E02500.1
Cluster HCAA Clusters: Cluster_56

Target Alias Description ECC score Gene Family Method Actions
GRMZM2G016749 No alias Protein phosphatase 2C family protein 0.03 Orthogroups_2024-Update
GRMZM2G443509 No alias Protein phosphatase 2C family protein 0.02 Orthogroups_2024-Update
LOC_Os04g33080 No alias protein phosphatase 2C, putative, expressed 0.03 Orthogroups_2024-Update
Sopen01g028470 No alias Protein phosphatase 2C 0.04 Orthogroups_2024-Update
Sopen12g034270 No alias Protein phosphatase 2C 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0004332 fructose-bisphosphate aldolase activity IEP Predicted GO
BP GO:0006778 porphyrin-containing compound metabolic process IEP Predicted GO
BP GO:0006787 porphyrin-containing compound catabolic process IEP Predicted GO
BP GO:0015994 chlorophyll metabolic process IEP Predicted GO
BP GO:0015996 chlorophyll catabolic process IEP Predicted GO
MF GO:0016651 oxidoreductase activity, acting on NAD(P)H IEP Predicted GO
MF GO:0016655 oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor IEP Predicted GO
MF GO:0016832 aldehyde-lyase activity IEP Predicted GO
BP GO:0019439 aromatic compound catabolic process IEP Predicted GO
BP GO:0033013 tetrapyrrole metabolic process IEP Predicted GO
BP GO:0033015 tetrapyrrole catabolic process IEP Predicted GO
BP GO:0042440 pigment metabolic process IEP Predicted GO
BP GO:0044270 cellular nitrogen compound catabolic process IEP Predicted GO
BP GO:0046149 pigment catabolic process IEP Predicted GO
BP GO:0046700 heterocycle catabolic process IEP Predicted GO
MF GO:0047746 chlorophyllase activity IEP Predicted GO
BP GO:0051186 cofactor metabolic process IEP Predicted GO
BP GO:0051187 cofactor catabolic process IEP Predicted GO
BP GO:1901361 organic cyclic compound catabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR001932 PPM-type_phosphatase_dom 179 438
No external refs found!