Description : nucleoporin of nuclear pore complex *(NUP35)
Gene families : OG_42_0004983 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0004983_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | Brassica rapa: Brara.E02524.1 | |
Cluster | HCAA Clusters: Cluster_102 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
LOC_Os05g44380 | No alias | MPPN domain containing protein, expressed | 0.02 | Orthogroups_2024-Update | |
Seita.5G141500.1 | No alias | nucleoporin of nuclear pore complex *(NUP35) | 0.03 | Orthogroups_2024-Update | |
Sopen03g039700 | No alias | Nup53/35/40-type RNA recognition motif | 0.03 | Orthogroups_2024-Update |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
No GO annotation available for this sequence |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0001181 | RNA polymerase I general transcription initiation factor activity | IEP | Predicted GO |
MF | GO:0001882 | nucleoside binding | IEP | Predicted GO |
MF | GO:0001883 | purine nucleoside binding | IEP | Predicted GO |
MF | GO:0003723 | RNA binding | IEP | Predicted GO |
MF | GO:0003729 | mRNA binding | IEP | Predicted GO |
MF | GO:0003735 | structural constituent of ribosome | IEP | Predicted GO |
MF | GO:0004827 | proline-tRNA ligase activity | IEP | Predicted GO |
MF | GO:0005198 | structural molecule activity | IEP | Predicted GO |
MF | GO:0005525 | GTP binding | IEP | Predicted GO |
CC | GO:0005840 | ribosome | IEP | Predicted GO |
BP | GO:0006361 | transcription initiation from RNA polymerase I promoter | IEP | Predicted GO |
BP | GO:0006412 | translation | IEP | Predicted GO |
BP | GO:0006433 | prolyl-tRNA aminoacylation | IEP | Predicted GO |
BP | GO:0006518 | peptide metabolic process | IEP | Predicted GO |
BP | GO:0009059 | macromolecule biosynthetic process | IEP | Predicted GO |
MF | GO:0019001 | guanyl nucleotide binding | IEP | Predicted GO |
MF | GO:0032549 | ribonucleoside binding | IEP | Predicted GO |
MF | GO:0032550 | purine ribonucleoside binding | IEP | Predicted GO |
MF | GO:0032561 | guanyl ribonucleotide binding | IEP | Predicted GO |
BP | GO:0034641 | cellular nitrogen compound metabolic process | IEP | Predicted GO |
BP | GO:0034645 | cellular macromolecule biosynthetic process | IEP | Predicted GO |
CC | GO:0035145 | exon-exon junction complex | IEP | Predicted GO |
BP | GO:0043043 | peptide biosynthetic process | IEP | Predicted GO |
CC | GO:0043228 | non-membrane-bounded organelle | IEP | Predicted GO |
CC | GO:0043232 | intracellular non-membrane-bounded organelle | IEP | Predicted GO |
BP | GO:0043603 | cellular amide metabolic process | IEP | Predicted GO |
BP | GO:0043604 | amide biosynthetic process | IEP | Predicted GO |
BP | GO:0044271 | cellular nitrogen compound biosynthetic process | IEP | Predicted GO |
MF | GO:0051087 | chaperone binding | IEP | Predicted GO |
MF | GO:0140223 | general transcription initiation factor activity | IEP | Predicted GO |
BP | GO:1901566 | organonitrogen compound biosynthetic process | IEP | Predicted GO |
CC | GO:1990904 | ribonucleoprotein complex | IEP | Predicted GO |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR007846 | RRM_NUP35_dom | 184 | 267 |
No external refs found! |