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  5. Brara.E02620.1

Brara.E02620.1


Description : Unknown function


Gene families : OG_42_0005801 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0005801_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.E02620.1
Cluster HCAA Clusters: Cluster_288

Target Alias Description ECC score Gene Family Method Actions
PSME_00035149-RA No alias (at3g15200 : 375.0) Tetratricopeptide repeat (TPR)-like... 0.04 Orthogroups_2024-Update
Seita.5G104700.1 No alias Unknown function 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004843 thiol-dependent ubiquitin-specific protease activity IEP Predicted GO
MF GO:0008234 cysteine-type peptidase activity IEP Predicted GO
MF GO:0008270 zinc ion binding IEP Predicted GO
BP GO:0016579 protein deubiquitination IEP Predicted GO
MF GO:0019783 ubiquitin-like protein-specific protease activity IEP Predicted GO
MF GO:0036459 thiol-dependent ubiquitinyl hydrolase activity IEP Predicted GO
MF GO:0046914 transition metal ion binding IEP Predicted GO
BP GO:0070646 protein modification by small protein removal IEP Predicted GO
BP GO:0070647 protein modification by small protein conjugation or removal IEP Predicted GO
MF GO:0101005 ubiquitinyl hydrolase activity IEP Predicted GO
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 148 175
IPR002885 Pentatricopeptide_repeat 179 202
IPR002885 Pentatricopeptide_repeat 250 277
IPR002885 Pentatricopeptide_repeat 278 308
IPR002885 Pentatricopeptide_repeat 315 364
IPR002885 Pentatricopeptide_repeat 423 466
No external refs found!