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  5. Brara.E02634.1

Brara.E02634.1


Description : RING-H2-class CTL-subclass E3 ubiquitin ligase


Gene families : OG_42_0000181 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000181_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.E02634.1
Cluster HCAA Clusters: Cluster_207

Target Alias Description ECC score Gene Family Method Actions
A4A49_23702 No alias putative e3 ubiquitin-protein ligase hip1 0.05 Orthogroups_2024-Update
Bradi5g20760 No alias RING/U-box superfamily protein 0.03 Orthogroups_2024-Update
Brara.F00132.1 No alias RING-H2-class CTL-subclass E3 ubiquitin ligase 0.03 Orthogroups_2024-Update
GRMZM2G174926 No alias RING/U-box superfamily protein 0.03 Orthogroups_2024-Update
Glyma.08G049400 No alias RING/U-box superfamily protein 0.03 Orthogroups_2024-Update
HORVU1Hr1G082970.1 No alias RING-H2-class CTL-subclass E3 ubiquitin ligase 0.02 Orthogroups_2024-Update
Potri.001G373700 No alias RING/U-box superfamily protein 0.05 Orthogroups_2024-Update
Potri.010G220700 No alias RING/U-box superfamily protein 0.03 Orthogroups_2024-Update
Seita.7G226600.1 No alias RING-H2-class CTL-subclass E3 ubiquitin ligase 0.04 Orthogroups_2024-Update
Solyc08g006460 No alias RING/U-box superfamily protein (AHRD V3.3 *** AT5G10650.2) 0.03 Orthogroups_2024-Update
Solyc10g050170 No alias RING/U-box superfamily protein (AHRD V3.3 *** AT2G15530.7) 0.02 Orthogroups_2024-Update
Solyc10g084710 No alias LOW QUALITY:Beta-glucosidase, GBA2 type family protein... 0.03 Orthogroups_2024-Update
Sopen03g037790 No alias Ring finger domain 0.02 Orthogroups_2024-Update
Sopen12g032260 No alias Ring finger domain 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Predicted GO
MF GO:0004332 fructose-bisphosphate aldolase activity IEP Predicted GO
CC GO:0005634 nucleus IEP Predicted GO
BP GO:0016310 phosphorylation IEP Predicted GO
MF GO:0016832 aldehyde-lyase activity IEP Predicted GO
MF GO:0036094 small molecule binding IEP Predicted GO
MF GO:0043531 ADP binding IEP Predicted GO
MF GO:0051287 NAD binding IEP Predicted GO
MF GO:1901265 nucleoside phosphate binding IEP Predicted GO
InterPro domains Description Start Stop
IPR001841 Znf_RING 385 428
No external refs found!