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  5. Brara.E02816.1

Brara.E02816.1


Description : E3 ubiquitin ligase *(BRG)


Gene families : OG_42_0000224 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000224_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.E02816.1
Cluster HCAA Clusters: Cluster_49

Target Alias Description ECC score Gene Family Method Actions
At1g10650 No alias Putative S-ribonuclease binding protein SBP1... 0.03 Orthogroups_2024-Update
At3g12920 No alias Probable BOI-related E3 ubiquitin-protein ligase 3... 0.03 Orthogroups_2024-Update
Bradi5g08790 No alias SBP (S-ribonuclease binding protein) family protein 0.06 Orthogroups_2024-Update
GRMZM2G067865 No alias SBP (S-ribonuclease binding protein) family protein 0.03 Orthogroups_2024-Update
Sobic.001G293600.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Sobic.006G063200.2 No alias Unknown function 0.03 Orthogroups_2024-Update
Solyc02g069180 No alias SBP (S-ribonuclease binding protein) family protein... 0.03 Orthogroups_2024-Update
Solyc04g078760 No alias CONSTANS interacting protein 4 0.03 Orthogroups_2024-Update
Sopen02g009960 No alias Zinc finger, C3HC4 type (RING finger) 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000062 fatty-acyl-CoA binding IEP Predicted GO
CC GO:0000148 1,3-beta-D-glucan synthase complex IEP Predicted GO
BP GO:0000272 polysaccharide catabolic process IEP Predicted GO
MF GO:0003843 1,3-beta-D-glucan synthase activity IEP Predicted GO
MF GO:0004175 endopeptidase activity IEP Predicted GO
MF GO:0004435 phosphatidylinositol phospholipase C activity IEP Predicted GO
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP Predicted GO
MF GO:0004565 beta-galactosidase activity IEP Predicted GO
MF GO:0004602 glutathione peroxidase activity IEP Predicted GO
MF GO:0004620 phospholipase activity IEP Predicted GO
MF GO:0004629 phospholipase C activity IEP Predicted GO
BP GO:0005975 carbohydrate metabolic process IEP Predicted GO
BP GO:0005976 polysaccharide metabolic process IEP Predicted GO
BP GO:0006074 (1->3)-beta-D-glucan metabolic process IEP Predicted GO
BP GO:0006075 (1->3)-beta-D-glucan biosynthetic process IEP Predicted GO
CC GO:0009341 beta-galactosidase complex IEP Predicted GO
MF GO:0015925 galactosidase activity IEP Predicted GO
MF GO:0016160 amylase activity IEP Predicted GO
MF GO:0016161 beta-amylase activity IEP Predicted GO
MF GO:0016298 lipase activity IEP Predicted GO
MF GO:0016491 oxidoreductase activity IEP Predicted GO
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP Predicted GO
MF GO:0030151 molybdenum ion binding IEP Predicted GO
CC GO:0031011 Ino80 complex IEP Predicted GO
CC GO:0033202 DNA helicase complex IEP Predicted GO
CC GO:0044454 nuclear chromosome part IEP Predicted GO
CC GO:0070603 SWI/SNF superfamily-type complex IEP Predicted GO
CC GO:0097346 INO80-type complex IEP Predicted GO
MF GO:1901567 fatty acid derivative binding IEP Predicted GO
MF GO:1901681 sulfur compound binding IEP Predicted GO
CC GO:1902494 catalytic complex IEP Predicted GO
CC GO:1904949 ATPase complex IEP Predicted GO

No InterPro domains available for this sequence

No external refs found!