Description : RNA editing factor *(MEF22)
Gene families : OG_42_0000001 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | Brassica rapa: Brara.E02827.1 | |
Cluster | HCAA Clusters: Cluster_41 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
130453 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.03 | Orthogroups_2024-Update | |
94907 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.05 | Orthogroups_2024-Update | |
A4A49_36693 | No alias | pentatricopeptide repeat-containing protein | 0.04 | Orthogroups_2024-Update | |
At1g03510 | No alias | Putative pentatricopeptide repeat-containing protein... | 0.04 | Orthogroups_2024-Update | |
At1g06140 | No alias | Pentatricopeptide repeat-containing protein At1g06140,... | 0.04 | Orthogroups_2024-Update | |
At3g20730 | No alias | Pentatricopeptide repeat-containing protein At3g20730... | 0.04 | Orthogroups_2024-Update | |
At5g59200 | No alias | Putative pentatricopeptide repeat-containing protein... | 0.04 | Orthogroups_2024-Update | |
Bradi1g01970 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.04 | Orthogroups_2024-Update | |
Bradi2g09441 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.03 | Orthogroups_2024-Update | |
Glyma.01G011300 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.04 | Orthogroups_2024-Update | |
Glyma.02G043900 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.03 | Orthogroups_2024-Update | |
Glyma.02G227300 | No alias | Pentatricopeptide repeat (PPR-like) superfamily protein | 0.04 | Orthogroups_2024-Update | |
Glyma.11G061600 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.04 | Orthogroups_2024-Update | |
Glyma.13G220450 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.02 | Orthogroups_2024-Update | |
Glyma.17G117001 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.05 | Orthogroups_2024-Update | |
HORVU2Hr1G084530.3 | No alias | RNA editing factor *(SLO4) | 0.03 | Orthogroups_2024-Update | |
LOC_Os03g13830 | No alias | pentatricopeptide, putative, expressed | 0.03 | Orthogroups_2024-Update | |
MA_68707g0010 | No alias | (at3g24000 : 546.0) Tetratricopeptide repeat (TPR)-like... | 0.04 | Orthogroups_2024-Update | |
MA_99849g0010 | No alias | (at4g02750 : 581.0) Tetratricopeptide repeat (TPR)-like... | 0.04 | Orthogroups_2024-Update | |
PSME_00002375-RA | No alias | (at3g03580 : 696.0) Tetratricopeptide repeat (TPR)-like... | 0.03 | Orthogroups_2024-Update | |
PSME_00052053-RA | No alias | (at1g11290 : 599.0) Pentatricopeptide Repeat Protein... | 0.03 | Orthogroups_2024-Update | |
Potri.001G466066 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.03 | Orthogroups_2024-Update | |
Potri.006G001200 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.04 | Orthogroups_2024-Update | |
Potri.018G035900 | No alias | mitochondrial editing factor 21 | 0.03 | Orthogroups_2024-Update | |
Seita.2G203300.1 | No alias | Unknown function | 0.04 | Orthogroups_2024-Update | |
Seita.3G126600.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
Seita.4G100100.1 | No alias | Unknown function | 0.05 | Orthogroups_2024-Update | |
Seita.6G130100.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0008270 | zinc ion binding | IEA | 16Dec |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0004176 | ATP-dependent peptidase activity | IEP | Predicted GO |
MF | GO:0004252 | serine-type endopeptidase activity | IEP | Predicted GO |
MF | GO:0004356 | glutamate-ammonia ligase activity | IEP | Predicted GO |
BP | GO:0006541 | glutamine metabolic process | IEP | Predicted GO |
BP | GO:0006542 | glutamine biosynthetic process | IEP | Predicted GO |
BP | GO:0008652 | cellular amino acid biosynthetic process | IEP | Predicted GO |
BP | GO:0009064 | glutamine family amino acid metabolic process | IEP | Predicted GO |
BP | GO:0009084 | glutamine family amino acid biosynthetic process | IEP | Predicted GO |
MF | GO:0016211 | ammonia ligase activity | IEP | Predicted GO |
MF | GO:0016879 | ligase activity, forming carbon-nitrogen bonds | IEP | Predicted GO |
MF | GO:0016880 | acid-ammonia (or amide) ligase activity | IEP | Predicted GO |
MF | GO:0042623 | ATPase activity, coupled | IEP | Predicted GO |
BP | GO:0071705 | nitrogen compound transport | IEP | Predicted GO |
BP | GO:1901605 | alpha-amino acid metabolic process | IEP | Predicted GO |
BP | GO:1901607 | alpha-amino acid biosynthetic process | IEP | Predicted GO |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR002885 | Pentatricopeptide_repeat | 362 | 385 |
IPR002885 | Pentatricopeptide_repeat | 462 | 485 |
IPR002885 | Pentatricopeptide_repeat | 266 | 285 |
IPR002885 | Pentatricopeptide_repeat | 188 | 217 |
IPR002885 | Pentatricopeptide_repeat | 286 | 334 |
IPR002885 | Pentatricopeptide_repeat | 83 | 129 |
IPR002885 | Pentatricopeptide_repeat | 387 | 434 |
IPR032867 | DYW_dom | 602 | 694 |
No external refs found! |