1. Home
  2. Species
  3. Brassica rapa
  4. Sequence
  5. Brara.E02866.1

Brara.E02866.1


Description : pathogen polygalacturonase inhibitor *(PGIP)


Gene families : OG_42_0000642 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000642_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.E02866.1
Cluster HCAA Clusters: Cluster_11

Target Alias Description ECC score Gene Family Method Actions
At1g33600 No alias Leucine-rich repeat (LRR) family protein... 0.03 Orthogroups_2024-Update
At1g33610 No alias Leucine-rich repeat (LRR) family protein... 0.02 Orthogroups_2024-Update
At5g06860 No alias PGIP1 [Source:UniProtKB/TrEMBL;Acc:A0A178UBN4] 0.03 Orthogroups_2024-Update
At5g06870 No alias PGIP2 [Source:UniProtKB/TrEMBL;Acc:A0A178UDM1] 0.03 Orthogroups_2024-Update
Sobic.002G343600.1 No alias pathogen polygalacturonase inhibitor *(PGIP) 0.03 Orthogroups_2024-Update
Sopen10g023690 No alias Leucine rich repeat 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA 16Dec
Toggle parental
Type GO Term Name Evidence Source
CC GO:0000444 MIS12/MIND type complex IEP Predicted GO
MF GO:0004525 ribonuclease III activity IEP Predicted GO
MF GO:0008107 galactoside 2-alpha-L-fucosyltransferase activity IEP Predicted GO
MF GO:0008134 transcription factor binding IEP Predicted GO
MF GO:0008417 fucosyltransferase activity IEP Predicted GO
MF GO:0017025 TBP-class protein binding IEP Predicted GO
MF GO:0031127 alpha-(1,2)-fucosyltransferase activity IEP Predicted GO
MF GO:0032296 double-stranded RNA-specific ribonuclease activity IEP Predicted GO
BP GO:0042546 cell wall biogenesis IEP Predicted GO
InterPro domains Description Start Stop
IPR013210 LRR_N_plant-typ 24 60
IPR001611 Leu-rich_rpt 110 135
No external refs found!